View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14972_high_7 (Length: 312)

Name: NF14972_high_7
Description: NF14972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14972_high_7
NF14972_high_7
[»] chr4 (8 HSPs)
chr4 (5-160)||(31414761-31414918)
chr4 (7-107)||(39310396-39310496)
chr4 (8-107)||(24484784-24484883)
chr4 (13-113)||(32158805-32158906)
chr4 (13-76)||(32159521-32159584)
chr4 (13-80)||(44095310-44095377)
chr4 (7-76)||(5469963-5470032)
chr4 (7-43)||(44516785-44516821)
[»] chr3 (10 HSPs)
chr3 (7-141)||(37886654-37886788)
chr3 (3-143)||(55444512-55444653)
chr3 (13-160)||(40613714-40613862)
chr3 (7-53)||(44311393-44311439)
chr3 (13-135)||(55439871-55439993)
chr3 (7-80)||(40809579-40809652)
chr3 (8-76)||(35903690-35903758)
chr3 (61-111)||(17057157-17057207)
chr3 (34-127)||(3002074-3002167)
chr3 (7-43)||(44312401-44312437)
[»] scaffold0330 (2 HSPs)
scaffold0330 (13-141)||(13176-13304)
scaffold0330 (13-141)||(12523-12652)
[»] chr2 (13 HSPs)
chr2 (6-141)||(34173794-34173929)
chr2 (7-107)||(39063805-39063905)
chr2 (5-123)||(34172421-34172538)
chr2 (14-96)||(39064568-39064650)
chr2 (6-76)||(35029861-35029931)
chr2 (39-143)||(33513941-33514046)
chr2 (7-110)||(16870579-16870682)
chr2 (13-76)||(4855339-4855402)
chr2 (6-76)||(34228146-34228216)
chr2 (13-106)||(4854479-4854572)
chr2 (6-111)||(39062218-39062323)
chr2 (13-109)||(3467310-3467406)
chr2 (7-43)||(6205456-6205492)
[»] chr5 (8 HSPs)
chr5 (40-141)||(19778695-19778797)
chr5 (7-110)||(33530665-33530768)
chr5 (59-126)||(1222309-1222376)
chr5 (61-111)||(43378626-43378676)
chr5 (61-111)||(43379449-43379499)
chr5 (13-106)||(120079-120172)
chr5 (61-126)||(1217846-1217911)
chr5 (39-79)||(37839994-37840034)
[»] chr7 (5 HSPs)
chr7 (13-160)||(41347097-41347245)
chr7 (13-113)||(18947292-18947392)
chr7 (7-72)||(16980471-16980536)
chr7 (13-106)||(25675716-25675809)
chr7 (13-113)||(18948216-18948316)
[»] chr1 (3 HSPs)
chr1 (39-124)||(1765194-1765279)
chr1 (7-107)||(7338767-7338867)
chr1 (7-80)||(15668275-15668348)
[»] chr8 (8 HSPs)
chr8 (13-104)||(6461886-6461977)
chr8 (14-110)||(38444430-38444526)
chr8 (4-80)||(39309664-39309740)
chr8 (7-107)||(42578709-42578809)
chr8 (13-111)||(42503032-42503130)
chr8 (7-111)||(7870337-7870441)
chr8 (13-49)||(34587359-34587395)
chr8 (7-43)||(42503954-42503990)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 5 - 160
Target Start/End: Complemental strand, 31414918 - 31414761
Alignment:
Q  5 tggagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaa 104  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| || ||||||||||||    
T  31414918 tggagtccatctttgctccatttaagtttcctcaatttattccttttcactttattgatatgtgacatgtggcaaatgtaaaaagaagggttgagattaa 31414819  T
Q  105 aaggtttagcatgaacacttttt-aaagaaaaataaaaca-cgctatcttcttctttc 160  Q
    ||| ||| |||||| |||||||| || ||||| ||||||| |||| ||||||||||||    
T  31414818 aagctttggcatgagcactttttcaatgaaaagtaaaacaccgctctcttcttctttc 31414761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 39310396 - 39310496
Alignment:
Q  7 gagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaa 106  Q
    ||||| |||||||||||||||| | ||||||||||||| || |||||  || | ||||| |||||||||| |||  ||||| ||| || |||||||||||    
T  39310396 gagtccatctttgctccatttaagattcctcaatttatcccatttcaagttatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 39310495  T
Q  107 g 107  Q
    |    
T  39310496 g 39310496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 24484784 - 24484883
Alignment:
Q  8 agtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaag 107  Q
    |||| |||||||||||||||| | ||||||||||||| |  |||||  || | |||||||||||||||| |||  ||||| ||| || ||||||||||||    
T  24484784 agtccatctttgctccatttaagattcctcaatttatcctatttcaagttatagatgtgtgacatgtggaaaaaataaaaccaatggctgagattaaaag 24484883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 32158805 - 32158906
Alignment:
Q  13 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatg-taaaaacaacggttgagattaaaaggttt 111  Q
    |||| ||||||||||||||||||||||||||  || ||||| |   | |||||||||||||| ||||| | ||||| ||| ||  |||||||||||||||    
T  32158805 atctctgctccatttaggtttcctcaatttaccccatttcattccttggatgtgtgacatgtagcaaaagttaaaaccaagggcagagattaaaaggttt 32158904  T
Q  112 ag 113  Q
    ||    
T  32158905 ag 32158906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 32159584 - 32159521
Alignment:
Q  13 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtgg 76  Q
    |||||||||||||||||||||||||||||||  || ||||| |   | ||||||||||||||||    
T  32159584 atctttgctccatttaggtttcctcaatttaccccatttcattccttggatgtgtgacatgtgg 32159521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 44095310 - 44095377
Alignment:
Q  13 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaa 80  Q
    ||||||||||||||| | ||||||| ||||| ||||||||| | ||  ||||||||||||||| ||||    
T  44095310 atctttgctccattttgatttcctccatttactccttttcaatgtgcagatgtgtgacatgtgtcaaa 44095377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 5470032 - 5469963
Alignment:
Q  7 gagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtgg 76  Q
    ||||| |||||||||||||||| |||| |||||||||| || |||  | || | ||||||||||||||||    
T  5470032 gagtccatctttgctccatttaagtttgctcaatttatcccatttaccattatggatgtgtgacatgtgg 5469963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 44516785 - 44516821
Alignment:
Q  7 gagtctatctttgctccatttaggtttcctcaattta 43  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  44516785 gagtctatctttgatccatttaggtttccttaattta 44516821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 37886654 - 37886788
Alignment:
Q  7 gagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaa 106  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||| ||||| ||||||||    
T  37886654 gagtccatttttgcttcatttaggtttcctcaatttattccttttcactttattgatgtgtgacatgtggcaaatgtaaagtcaagggttgggattaaaa 37886753  T
Q  107 ggtttagcatgaacactttttaaagaaaaataaaa 141  Q
    | ||| |||||| |||||||||| |||||||||||    
T  37886754 gctttggcatgagcactttttaatgaaaaataaaa 37886788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 55444653 - 55444512
Alignment:
Q  3 tatggagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagatt 102  Q
    ||||||||| ||||||||| |||||| |  | ||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||| || || ||||    
T  55444653 tatggagtccatctttgcttcatttaagaatgctccatttatcccttttcactttattgatgtgtgacatgtggcaaatgtaaaaacaagggctgggatt 55444554  T
Q  103 aaaaggtttagcatgaacactt-tttaaagaaaaataaaaca 143  Q
    | ||  | || ||| ||||||| ||||| |||||||||||||    
T  55444553 agaatctctatcataaacacttgtttaatgaaaaataaaaca 55444512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 40613862 - 40613714
Alignment:
Q  13 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggttta 112  Q
    |||||||||||||||||    |||| |||||| ||| |||| ||||| ||||| |||||||||||| || | ||| ||| || ||| ||||| |||||||    
T  40613862 atctttgctccatttagcaagcctccatttatccctgttcattttgtagatgtctgacatgtggcacatattaaatcaagggctgaaattaacaggttta 40613763  T
Q  113 gcatgaacactt-tttaaagaaaaataaaacacgctatcttcttctttc 160  Q
     ||| ||||||| ||||| |||||||||||||| || | ||||||||||    
T  40613762 acataaacacttgtttaatgaaaaataaaacacactcttttcttctttc 40613714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 44311393 - 44311439
Alignment:
Q  7 gagtctatctttgctccatttaggtttcctcaatttattccttttca 53  Q
    |||||||||||||||| ||||| |||||||||||||||||| |||||    
T  44311393 gagtctatctttgctctatttatgtttcctcaatttattccatttca 44311439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 55439871 - 55439993
Alignment:
Q  13 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggttta 112  Q
    |||||||||||||||| |  | ||  |||||| |||||||||||| |||||||||||||| |||||| | || || ||| ||||||||||  ||| ||||    
T  55439871 atctttgctccatttaagaatgcttcatttatcccttttcactttattgatgtgtgacatatggcaagtatacaatcaagggttgagattgcaagattta 55439970  T
Q  113 gcatgaacactttttaaagaaaa 135  Q
     ||| | ||||||| || |||||    
T  55439971 acataagcacttttcaatgaaaa 55439993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 40809579 - 40809652
Alignment:
Q  7 gagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaa 80  Q
    |||| |||||||||||||||| ||||||||||||||||||| ||| |  |  | ||||||||||| ||||||||    
T  40809579 gagtgtatctttgctccatttgggtttcctcaatttattccattttaagtcatggatgtgtgacacgtggcaaa 40809652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 35903690 - 35903758
Alignment:
Q  8 agtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtgg 76  Q
    |||||||||||||||||||||||||  |||||||||  || |||||  || | ||||||||||||||||    
T  35903690 agtctatctttgctccatttaggttctctcaatttaccccatttcaagttatggatgtgtgacatgtgg 35903758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 17057157 - 17057207
Alignment:
Q  61 gatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggttt 111  Q
    ||||||||||| ||||||||  | ||| |||||||||||||||||||||||    
T  17057157 gatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaaggttt 17057207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 3002074 - 3002167
Alignment:
Q  34 cctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacacttttt 127  Q
    |||| |||||| |||||||| ||  ||||||||||| || |||||||||| ||| ||| || |  ||||||||| | |||||| ||||||||||    
T  3002074 cctccatttatcccttttcatttcattgatgtgtgatatttggcaaatgttaaatcaagggctaggattaaaagctctagcataaacacttttt 3002167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 44312437 - 44312401
Alignment:
Q  7 gagtctatctttgctccatttaggtttcctcaattta 43  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  44312437 gagtccatctttgctccatttatgtttcctcaattta 44312401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 13304 - 13176
Alignment:
Q  13 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggttta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||  ||| ||||| ||||||||| |||     
T  13304 atctttgctccatttaggtttcctcaatttattccttttcactttattgatgtgtgacatgtggcaaatttaaagtcaagggttgggattaaaagctttg 13205  T
Q  113 gcatgaacactttttaaagaaaaataaaa 141  Q
    |||| | |||||||||| |||||||||||    
T  13204 gcattagcactttttaatgaaaaataaaa 13176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 12523 - 12652
Alignment:
Q  13 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggttta 112  Q
    |||||||||| ||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||||||| |||     
T  12523 atctttgctctatttaagtttcctcaatttattccttttcactttattgttgtgtgacatgtggcaaatgtaaaaacaagggttgggattaaaagctttg 12622  T
Q  113 gcatgaacac-tttttaaagaaaaataaaa 141  Q
    |||||| ||| ||||||| |||||||||||    
T  12623 gcatgagcacttttttaatgaaaaataaaa 12652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 34173929 - 34173794
Alignment:
Q  6 ggagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaa 105  Q
    |||||| ||||||||||| ||| ||||| ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| |||||||||||||    
T  34173929 ggagtccatctttgctcccttttggttttctcaatttattccttttcattttattgatgtgtgacatgtgacaaatgtaaaaacaatggttgagattaaa 34173830  T
Q  106 aggtttagcatgaacactttttaaagaaaaataaaa 141  Q
    || | | || ||||||||||||||  ||||||||||    
T  34173829 agctatggcgtgaacactttttaataaaaaataaaa 34173794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 39063805 - 39063905
Alignment:
Q  7 gagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaa 106  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||| ||||| ||||||||    
T  39063805 gagtccatctttgctccatttaggtttcctcaatttattcattttcactttattgatgtatgacatgtggcaaatgtaaaaacaatggttgggattaaaa 39063904  T
Q  107 g 107  Q
    |    
T  39063905 g 39063905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 34172421 - 34172538
Alignment:
Q  5 tggagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaa 104  Q
    ||||||| |||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||| |||||||||||| || ||||||||||||    
T  34172421 tggagtcaatcttttctccatttaggttttctcaatttattccttttcattttattgatgtgtgacatgtgacaaatgtaaaaataagggttgagattaa 34172520  T
Q  105 aaggtttagcatgaacact 123  Q
    ||| ||| |||||||||||    
T  34172521 aagcttt-gcatgaacact 34172538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 39064650 - 39064568
Alignment:
Q  14 tctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggtt 96  Q
    ||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  39064650 tctttgctccatttatgtttcctcaatttattccttttcattttattgatgtgtgacatgtggcaaatgtaaaaacaagggtt 39064568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 35029931 - 35029861
Alignment:
Q  6 ggagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtgg 76  Q
    ||||||||||||||||||||||||||||||||||||||  || |||||  |  | ||||||||||||||||    
T  35029931 ggagtctatctttgctccatttaggtttcctcaatttaccccatttcaagtcatagatgtgtgacatgtgg 35029861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 143
Target Start/End: Complemental strand, 33514046 - 33513941
Alignment:
Q  39 atttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacactttt-taaagaaaaat 137  Q
    |||||| |||||||||||  ||||||| |||||| || |||||| |||| ||| ||||||||||||||| | |||||| | ||||||| | | |||||||    
T  33514046 atttatcccttttcacttcattgatgtatgacatttgacaaatgaaaaatcaagggttgagattaaaagttgtagcataatcacttttctgatgaaaaat 33513947  T
Q  138 aaaaca 143  Q
    ||||||    
T  33513946 aaaaca 33513941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 16870579 - 16870682
Alignment:
Q  7 gagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaa 106  Q
    ||||| |||||||||||||||||  |||||||||||||||||||||| |   | |||||||||||  | | |||  ||||  ||| ||||||||||||||    
T  16870579 gagtcaatctttgctccatttagccttcctcaatttattccttttcaatgcatagatgtgtgacacatagtaaaaataaatccaaaggttgagattaaaa 16870678  T
Q  107 ggtt 110  Q
    ||||    
T  16870679 ggtt 16870682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 4855402 - 4855339
Alignment:
Q  13 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtgg 76  Q
    |||||||||||||||| |||| ||||||||| ||||||||| | | | ||||||||||| ||||    
T  4855402 atctttgctccatttatgtttgctcaatttactccttttcaatgtatagatgtgtgacacgtgg 4855339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 34228146 - 34228216
Alignment:
Q  6 ggagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtgg 76  Q
    |||||| |||||||||||||||| | ||||||||||||  || |||||  || | ||||||||||||||||    
T  34228146 ggagtccatctttgctccatttaagattcctcaatttaccccatttcaagttatagatgtgtgacatgtgg 34228216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 4854479 - 4854572
Alignment:
Q  13 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaa 106  Q
    |||||||||||||||| |||  ||| ||||| ||||||||| | | | |||||||||||| ||| |||  ||||  ||| ||||||||||||||    
T  4854479 atctttgctccatttatgttgactccatttactccttttcaatgtatagatgtgtgacatatggtaaaaataaattcaatggttgagattaaaa 4854572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 39062218 - 39062323
Alignment:
Q  6 ggagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaa 105  Q
    ||||| |||||||||||||||| |||||  ||||||||| || |||||  |  | ||||| ||||||||||||||  |||||  || | ||| |||||||    
T  39062218 ggagtttatctttgctccattttggtttgttcaatttatcccatttcaagtcatagatgtatgacatgtggcaaaaataaaatgaatgtttgtgattaaa 39062317  T
Q  106 aggttt 111  Q
    ||||||    
T  39062318 aggttt 39062323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 3467406 - 3467310
Alignment:
Q  13 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggt 109  Q
    ||||||||||||||| |  || ||| ||||| ||||||| ||||  | |||||||||||| |||||||  ||||   || |||||||||||||||||    
T  3467406 atctttgctccattttgacttgctccatttactcctttttacttcatagatgtgtgacatatggcaaaactaaatctaagggttgagattaaaaggt 3467310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 6205492 - 6205456
Alignment:
Q  7 gagtctatctttgctccatttaggtttcctcaattta 43  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  6205492 gagtccatctttgctccatttaggcttcctcaattta 6205456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 19778797 - 19778695
Alignment:
Q  40 tttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacactt-tttaaagaaaaata 138  Q
    |||||||||||| ||||| ||||||| |||||||||||||||||||||| || ||||||||||||||| | |||||| ||||||| | ||| ||||||||    
T  19778797 tttattcctttttactttattgatgtttgacatgtggcaaatgtaaaaataagggttgagattaaaagctctagcataaacacttgtgtaatgaaaaata 19778698  T
Q  139 aaa 141  Q
    |||    
T  19778697 aaa 19778695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 33530768 - 33530665
Alignment:
Q  7 gagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaa 106  Q
    ||||| |||||||||||||||||  |||||||||||||||||||||| |   | |||||||||||  | | |||  ||||  ||| ||||||||||||||    
T  33530768 gagtcaatctttgctccatttagccttcctcaatttattccttttcaatgcatagatgtgtgacacatagtaaaaataaatccaaaggttgagattaaaa 33530669  T
Q  107 ggtt 110  Q
    ||||    
T  33530668 ggtt 33530665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 1222376 - 1222309
Alignment:
Q  59 ttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacactttt 126  Q
    |||||||||||||  |||||||||||||| ||| ||||| ||||||||| |||| ||| | |||||||    
T  1222376 ttgatgtgtgacacttggcaaatgtaaaatcaaaggttgggattaaaagctttaacataagcactttt 1222309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 43378626 - 43378676
Alignment:
Q  61 gatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggttt 111  Q
    ||||||||||| ||||||||  ||||| ||| |||||||||||||||||||    
T  43378626 gatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaaggttt 43378676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 43379499 - 43379449
Alignment:
Q  61 gatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggttt 111  Q
    ||||||||||||||||||||  ||||| ||| ||||| |||||||||||||    
T  43379499 gatgtgtgacatgtggcaaaaataaaagcaagggttgggattaaaaggttt 43379449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 120079 - 120172
Alignment:
Q  13 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaa 106  Q
    ||||||||||||||||| |||||||||||||  || |||||  || | |||| ||||||| ||| |||  |||||  || ||||||||||||||    
T  120079 atctttgctccatttagctttcctcaatttaccccatttcaagttatagatgcgtgacatatggaaaaaataaaataaatggttgagattaaaa 120172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 1217846 - 1217911
Alignment:
Q  61 gatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacactttt 126  Q
    |||||||||||| |||||||||| ||| ||| ||||  |||||||||||||| ||| | |||||||    
T  1217846 gatgtgtgacatttggcaaatgtgaaatcaagggtttggattaaaaggtttaacataagcactttt 1217911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 37839994 - 37840034
Alignment:
Q  39 atttattccttttcactttgttgatgtgtgacatgtggcaa 79  Q
    |||||| |||||||||||| |||| ||||||||||||||||    
T  37839994 atttatcccttttcactttattgacgtgtgacatgtggcaa 37840034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 41347097 - 41347245
Alignment:
Q  13 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggttta 112  Q
    ||||||||| |||||||    |||| |||||| ||| || | ||||| ||||| ||||||||||||||| | ||| ||| || |||||||||||  ||||    
T  41347097 atctttgcttcatttagcaagcctccatttatccctgtttattttgtagatgtctgacatgtggcaaatattaaatcaagggctgagattaaaaaattta 41347196  T
Q  113 gcatgaacactt-tttaaagaaaaataaaacacgctatcttcttctttc 160  Q
     ||| ||||||| ||||| |||||||||||||| || | ||||||||||    
T  41347197 acataaacacttgtttaatgaaaaataaaacacactcttttcttctttc 41347245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 18947292 - 18947392
Alignment:
Q  13 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggttta 112  Q
    ||||||||||||||||||   |||| |||||| || ||||||||  | |||||  |||||||||||||| ||||| ||| ||||||||||| |||| |||    
T  18947292 atctttgctccatttagggagcctccatttataccatttcacttcatagatgttggacatgtggcaaatataaaaccaatggttgagattagaaggctta 18947391  T
Q  113 g 113  Q
    |    
T  18947392 g 18947392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 16980471 - 16980536
Alignment:
Q  7 gagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacat 72  Q
    |||||||||||||||||||||||    |||||||||| |||||||||||||   ||||||||||||    
T  16980471 gagtctatctttgctccatttagcaagcctcaatttactccttttcactttacagatgtgtgacat 16980536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 25675809 - 25675716
Alignment:
Q  13 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaa 106  Q
    |||||||||||||||| |||  ||| ||||| ||||||||| | | | |||||||||||||||| |||  ||||  ||| ||||||||||||||    
T  25675809 atctttgctccatttatgttggctccatttactccttttcaatgtatagatgtgtgacatgtggtaaaaataaattcaatggttgagattaaaa 25675716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 18948316 - 18948216
Alignment:
Q  13 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggttta 112  Q
    ||||||||||||||||||   |||  |||||| || ||||||||  | ||||| ||||||||||||||| |||||  || || ||||||||||||| |||    
T  18948316 atctttgctccatttagggagccttcatttataccatttcacttcatggatgtttgacatgtggcaaatataaaattaatggctgagattaaaaggctta 18948217  T
Q  113 g 113  Q
    |    
T  18948216 g 18948216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 1765279 - 1765194
Alignment:
Q  39 atttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacactt 124  Q
    ||||||||||||||||||| |||||||||  ||||||||||||||||||  || || |  ||||||||| | |||||| |||||||    
T  1765279 atttattccttttcactttattgatgtgtagcatgtggcaaatgtaaaactaagggctaggattaaaagctctagcataaacactt 1765194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 7338867 - 7338767
Alignment:
Q  7 gagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaa 106  Q
    ||||| |||||||||||||||| |||||||||||||| ||| |||||  |  | ||||||| |||||||| |||  ||||| ||| ||||| ||||||||    
T  7338867 gagtccatctttgctccatttatgtttcctcaatttactccatttcaagtcatagatgtgtaacatgtggaaaaaataaaatcaatggttgtgattaaaa 7338768  T
Q  107 g 107  Q
    |    
T  7338767 g 7338767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 15668348 - 15668275
Alignment:
Q  7 gagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaa 80  Q
    ||||| |||||||||||||||| |    ||| ||||| ||||||||||| | | ||||||||||||||||||||    
T  15668348 gagtccatctttgctccatttaagaaggctccatttactccttttcactgtttggatgtgtgacatgtggcaaa 15668275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 6461886 - 6461977
Alignment:
Q  13 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaa 104  Q
    ||||||||||||||| ||||| ||||||||||| | |||||  || | ||||| ||||||||||||||  ||||| ||| ||||| ||||||    
T  6461886 atctttgctccatttcggtttgctcaatttatttcatttcaagttatagatgtatgacatgtggcaaaaataaaatcaatggttgtgattaa 6461977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 38444526 - 38444430
Alignment:
Q  14 tctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtt 110  Q
    |||| ||||||||||| |||||||||||||  |  |||||  || | |||||||||||||||| ||| || ||| ||| ||||| ||||||||||||    
T  38444526 tcttagctccatttagatttcctcaatttacccaatttcaagttatagatgtgtgacatgtggaaaaagttaaatcaagggttgtgattaaaaggtt 38444430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 39309740 - 39309664
Alignment:
Q  4 atggagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaa 80  Q
    |||||||||||||||||||||||||||   |||| |||||| ||||||||| |  | ||||  ||||||||||||||    
T  39309740 atggagtctatctttgctccatttaggaaacctccatttatcccttttcacctcatagatgattgacatgtggcaaa 39309664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 42578709 - 42578809
Alignment:
Q  7 gagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaa 106  Q
    ||||| |||||||||||||||| |||| |||||||||  || |||||  |  | ||||| ||||||||||||||  ||||| ||| || |||||||||||    
T  42578709 gagtccatctttgctccatttatgtttgctcaatttaccccatttcaagtcatagatgtatgacatgtggcaaaaataaaatcaatggctgagattaaaa 42578808  T
Q  107 g 107  Q
    |    
T  42578809 g 42578809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 42503032 - 42503130
Alignment:
Q  13 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggttt 111  Q
    |||||||||||||||| ||||||||||||||  || |||||  |  | |||||||||||||| | |||  ||||| ||| || || |||||||||||||    
T  42503032 atctttgctccatttaagtttcctcaatttaccccatttcatatcatagatgtgtgacatgtagaaaaaataaaatcaatggctgtgattaaaaggttt 42503130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 7870441 - 7870337
Alignment:
Q  7 gagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaa 106  Q
    ||||| |||||||||||||||||  || |||||||||  || ||| |  || | |||||||||||| ||| |||  ||||| ||| ||||| ||||||||    
T  7870441 gagtccatctttgctccatttagactttctcaatttaccccatttgaagttatagatgtgtgacatatggaaaaaataaaatcaatggttgtgattaaaa 7870342  T
Q  107 ggttt 111  Q
    |||||    
T  7870341 ggttt 7870337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 34587395 - 34587359
Alignment:
Q  13 atctttgctccatttaggtttcctcaatttattcctt 49  Q
    |||||||||||||||| |||||||||||||| |||||    
T  34587395 atctttgctccatttaagtttcctcaatttactcctt 34587359  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 42503990 - 42503954
Alignment:
Q  7 gagtctatctttgctccatttaggtttcctcaattta 43  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  42503990 gagtccatctttgctccatttaggcttcctcaattta 42503954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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