View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14972_high_9 (Length: 306)

Name: NF14972_high_9
Description: NF14972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14972_high_9
NF14972_high_9
[»] chr1 (1 HSPs)
chr1 (9-306)||(9614951-9615248)


Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 306
Target Start/End: Complemental strand, 9615248 - 9614951
Alignment:
Q  9 gaagaaaataaaaagttttctttctaaacataggaagcaaacaatacaattccaatgaatttctatatatcaagaaaatggaatccacatcatcaagaac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9615248 gaagaaaataaaaagttttctttctaaacataggaagcaaacaatacaattccaatgaatttctatatatcaagaaaatggaatccacatcatcaagaac 9615149  T
Q  109 atagcacttgaattagtaatgnnnnnnnaaggcattattggtatctataatgctttaccacataaaagcatagccacttatcaaatggtattccataaaa 208  Q
    ||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9615148 atagcacttcaattagtaatgtttttttaaggcattattggtatctataatgctttaccacataaaagcatagccacttatcaaatggtattccataaaa 9615049  T
Q  209 acaaagaaggaacatagccagcattttctaaccttacttaaaatttcaagtgacacgatggaaatatgtcaaaaagggatggtgcaaatctagtgcca 306  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9615048 acaaagaaggaacatagccagcattttttaaccttacttaaaatttcaagtgacacgatggaaatatgtcaaaaagggatggtgcaaatctagtgcca 9614951  T

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