View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14972_low_1 (Length: 458)
Name: NF14972_low_1
Description: NF14972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14972_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 151 - 441
Target Start/End: Original strand, 5874598 - 5874888
Alignment:
| Q |
151 |
gaaactagcacaagaaatggccgccctgtcaagggaatgagcaaccatattcactttcgtcgaataaacttaaccacaaagtttgaattaagagataaca |
250 |
Q |
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| T |
5874598 |
gaaactagcacaagaaatggccgccctgtcaagggaatgagcaaccatattcactttcgtcgaataaacttaaccacaaagtttgaattaagagataaca |
5874697 |
T |
|
| Q |
251 |
accgattaatttcagtaacgatggatccaaattcagaaatgtcttctttcttcctaaaaatagcatatgatagaatctttgaatcagtctctaaaatgac |
350 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5874698 |
accgattaatttcagtaacgatggatccaaattcagaaatgtcttctttcttcctaaaaatagcatatgatagaatctttgaatccgtctctaaaatgac |
5874797 |
T |
|
| Q |
351 |
atactgaaatcccgaactaagaactcattggatgactcccagaaaagtcattgcttcgctttctattaccggcaacatcggttcccgcaat |
441 |
Q |
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| T |
5874798 |
atactgaaatcccgaattaagaactcatttgatgactcctagaaaagccatcgcttcactttctattacctgcaacatcggttcccgcaat |
5874888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 5874441 - 5874567
Alignment:
| Q |
14 |
agacttaaaagcgagatttactaaatcgactatctataagtcggatgcatgattgannnnnnnnnacaacaaccaaatcaactcattttattaataacca |
113 |
Q |
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| T |
5874441 |
agacttaaaatcgagaattactaaatcgactatctataagtcggatacatgatcgatttttttctacaacaaccaaatcaactcatttcattaataacaa |
5874540 |
T |
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| Q |
114 |
gatcattaatacaaaaaggtaggaaat |
140 |
Q |
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| T |
5874541 |
gatcattaatacaaaaaggtaggaaat |
5874567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 79 - 441
Target Start/End: Original strand, 17333703 - 17334066
Alignment:
| Q |
79 |
acaacaaccaaatcaactcattttattaataaccagatcattaatacaaaaaggtaggaaatnnnnnnnttggaaactagcacaagaaatggccgccctg |
178 |
Q |
| |
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||||||| |||||| |||||||| ||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||| |
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| T |
17333703 |
acaacaatcaaatctactcatttcattaataacaagatcattaatacaaaaaggtaggaaatcaacaaattggagactagcacaaggaatggccggcctt |
17333802 |
T |
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| Q |
179 |
tcaagggaatgagcaaccatattcactt-tcgtcgaataaacttaaccacaaagtttgaattaagagataacaaccgattaatttcagtaacgatggatc |
277 |
Q |
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||||||||||| ||||||||||| ||| |||||||||||| ||||||| ||||||||||||| |||||||||||| ||||||||| ||||||||||||| |
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| T |
17333803 |
gcaagggaatgaacaaccatattcgcttgtcgtcgaataaatttaaccaaaaagtttgaattaggagataacaaccaattaatttcggtaacgatggatc |
17333902 |
T |
|
| Q |
278 |
caaattcagaaatgtcttctttcttcctaaaaatagcatatgatagaatctttgaatcagtctctaaaatgacatactgaaatcccgaactaagaactca |
377 |
Q |
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|||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| || |
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| T |
17333903 |
caaattcataaatgtcttctttcttctgaaaaatagcatctgatagaatctttgaatcagcctcaaaaatgacatactgaaatcccgaactaagaaccca |
17334002 |
T |
|
| Q |
378 |
ttggatgactcccagaaaagtcattgcttcgctttctattaccggcaacatcggttcccgcaat |
441 |
Q |
| |
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|| |||| ||||||| |||| ||||||||| | ||| || || ||||| |||||||| ||||| |
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| T |
17334003 |
tttgatggctcccaggaaagccattgcttcaccttccatcacttgcaacgtcggttcctgcaat |
17334066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 79 - 380
Target Start/End: Original strand, 43168952 - 43169254
Alignment:
| Q |
79 |
acaacaaccaaatcaactcattttattaataaccagatcattaatacaaaaaggtaggaaatnnnnnnnttggaaactagcacaagaaatggccgccctg |
178 |
Q |
| |
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||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| ||||| |||||||||| |||| |||||||| |
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| T |
43168952 |
acaacaaccaaatcaactcatttcattaataacaagatcatgaatacaaaaaggtaggaaatcaaaaaattggagactagcacaaaaaattgccgccctt |
43169051 |
T |
|
| Q |
179 |
tcaagggaatgagcaaccatattcactt-tcgtcgaataaacttaaccacaaagtttgaattaagagataacaaccgattaatttcagtaacgatggatc |
277 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| |||||||||||||||| ||| ||| |||||||||||| ||| |||| | |||| ||||| ||||||| |
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| T |
43169052 |
gcaagggaatgagcaaccatattcgcttgtcgccgaataaacttaaccataaaatttaaattaagagatagcaatcgataattttcggtaacaatggatc |
43169151 |
T |
|
| Q |
278 |
caaattcagaaatgtcttctttcttcctaaaaatagcatatgatagaatctttgaatcagtctctaaaatgacatactgaaatcccgaactaagaactca |
377 |
Q |
| |
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|||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| || |
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| T |
43169152 |
taaattcagaaatgtcttctttctttttaagaatagcatctgatagaatctttgaatcagtctcaaaaatgatatactgaaatcctgaactaagaaccca |
43169251 |
T |
|
| Q |
378 |
ttg |
380 |
Q |
| |
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||| |
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|
| T |
43169252 |
ttg |
43169254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 19308069 - 19308019
Alignment:
| Q |
79 |
acaacaaccaaatcaactcattttattaataaccagatcattaatacaaaa |
129 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |||||||||||| |||| |
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| T |
19308069 |
acaacaaccaaatcaactcatttcattaataacaagatcattaatagaaaa |
19308019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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