View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14973_low_1 (Length: 677)

Name: NF14973_low_1
Description: NF14973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14973_low_1
NF14973_low_1
[»] chr5 (1 HSPs)
chr5 (22-669)||(14544720-14545363)


Alignment Details
Target: chr5 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 22 - 669
Target Start/End: Original strand, 14544720 - 14545363
Alignment:
Q  22 acgatatcttcacggcggcggaaccttcttccgccggaattcaagatgacgtggcatctaatatcatgaaagctaaaattgcttctcatccttattatcc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14544720 acgatatcttcacggcggcggaaccttcttccgccggaattcaagatgacgtggcatctaatatcatgaaagctaaaattgcttctcatccttattaccc 14544819  T
Q  122 tcgccttcttcaagcctatatcgattgtcaaaaggtaaa-ttaaactaagtttgatcgtaactactctgcaacgtgacggtcttaatctagtttaacgaa 220  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  14544820 tcgccttcttcaagcctatatcgattgtcaaaaggtaaaattaaactaagtctgatcgtaactactctgcaacgtgacggtcttaatccagtttaacgaa 14544919  T
Q  221 tttctgcaattgctaataaattgtttaggttggtgctcctcctgaaattgcaagtttattggaagagattcgaagagaaaacgatatgtgtaaaagagac 320  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14544920 tttctataattgctaataaattgtttaggttggtgctcctcctgaaattgcaagtttattggaggagattcgaagagaaaacgatatgtgtaaaagagac 14545019  T
Q  321 gttgttgtttccacgtgttttggagccgatcccgagcttgatgaatttatggt-ccccccttaaatcctttctttctttctttgtttcgctcgcacgaac 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    |||||||||||||||||||| ||||||||    
T  14545020 gttgttgtttccacgtgttttggagccgatcccgagcttgatgaatttatggtcccccccttaaatc----ctttctttctttgtttcgcttgcacgaac 14545115  T
Q  420 acaaaaatatattta-nnnnnnnattttattgaaaataaataaattaaatgcaactttattgatgttgattatggttgtttcaggaaagttattgtgaca 518  Q
    |||||||||| | ||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14545116 acaaaaatatttatattttttttattttattgaaaataaataaattaaatgcaactttattgatgttgattatggttgtttcaggaaagttattgtgaca 14545215  T
Q  519 tgcttgtgaagtataaatcagaccttactcgaccttttgacgaagctaaaacgtttctgaacaagatcgaaactcaactcagtcatctctgcactggtgg 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   |||    
T  14545216 tgcttgtgaagtataaatcagaccttactcgaccttttgacgaagctacaacgtttctgaacaagatcgaaactcaactcagtcatctctgcac---tgg 14545312  T
Q  619 tggtgctgctgctgcttcacttccaactgcttctggtttgtttttcttctc 669  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14545313 tggtgctgctgctgcttcacttccaactgcttctggtttgtttttcttctc 14545363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University