View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14973_low_3 (Length: 340)
Name: NF14973_low_3
Description: NF14973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14973_low_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 53583300 - 53583639
Alignment:
| Q |
1 |
atcaaaaaatttaaacaccaatttgataccatgaccgtacgccagagaaccatctcgacggattcgagcagaacaacaacctgccgcaccaaactagatg |
100 |
Q |
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| T |
53583300 |
atcaaaaaatttaaacaccaatttgataccatgaccgtacgccagagaaccatctcgacagattcgagcagaacaacaacctgccgcaccaaactagatg |
53583399 |
T |
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| Q |
101 |
aattttaggataagaatattagannnnnnnnggtaataagtcggtgaaggaatttaataacaacggccaaattataatactccctccgtcctattataat |
200 |
Q |
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| T |
53583400 |
aattttaggataagaatattagattttttttggtaataagtcggtgaaggaatttaataacaacggccaaattataatactccctccgttctattataag |
53583499 |
T |
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| Q |
201 |
tgagtcttttgtccatttcacgtgtactaagcccaagtgtataaacgacagcgatagacaactagttttgaatgcgttgccacgcattgatgccttcttc |
300 |
Q |
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| T |
53583500 |
tgagtcttttgtccatttcacgtgtactaagaaaaagtgtataaaagaaagagatagaaaaatagttttgaatgtgttgtcaagtattgatgcattcttc |
53583599 |
T |
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| Q |
301 |
attcttctcaatgcacagtagaatatatggaattgattct |
340 |
Q |
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| T |
53583600 |
attattataaatgcaaagtagaatatatggaattgattct |
53583639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 29225322 - 29225365
Alignment:
| Q |
178 |
tactccctccgtcctattataattgagtcttttgtccatttcac |
221 |
Q |
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| T |
29225322 |
tactccctccgtcccattataattgagtcttttgctcatttcac |
29225365 |
T |
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