View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14973_low_5 (Length: 238)
Name: NF14973_low_5
Description: NF14973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14973_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 48450149 - 48450370
Alignment:
| Q |
1 |
gtgtcattgtctgataccaaactttactctcagctagctttcctgtgcaacatggcttacgtaataccccaaatcaaggtaagcacaaatttgcatattt |
100 |
Q |
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| T |
48450149 |
gtgtcattgtctgataccaaactttactctcagctagctttcctgtgcaacatggcttacgtaataccccaaatcaaggtaagcacaaatttgcatattt |
48450248 |
T |
|
| Q |
101 |
aatcaatgagatttcatatatatttccagatttccttttccatgcataaatcaaaagataaacatgaacatacaactctttctttctgaccaatttgcag |
200 |
Q |
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| T |
48450249 |
aatcaatgagatttcatatatatttccagatttccttttgcatgcataaatcaaaagataaacatgaacatacaactctttctttctgaccaatttgcag |
48450348 |
T |
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| Q |
201 |
gctcaggagttgaggagatact |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
48450349 |
gctcaggagttgaggagatact |
48450370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 28218327 - 28218277
Alignment:
| Q |
35 |
tagctttcctgtgcaacatggcttacgtaataccccaaatcaaggtaagca |
85 |
Q |
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| T |
28218327 |
tagctttcctttgcaacatggcttatgtaatacaccaaatcaagataagca |
28218277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 28229209 - 28229159
Alignment:
| Q |
35 |
tagctttcctgtgcaacatggcttacgtaataccccaaatcaaggtaagca |
85 |
Q |
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|||||||||| |||||||||||||| ||||||| |||||||||| |||||| |
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| T |
28229209 |
tagctttcctttgcaacatggcttatgtaatacaccaaatcaagataagca |
28229159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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