View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14974_high_4 (Length: 293)
Name: NF14974_high_4
Description: NF14974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14974_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 112 - 286
Target Start/End: Original strand, 22488873 - 22489046
Alignment:
| Q |
112 |
ttgtagattattcatgtccttcatagaggcactaacacccttatatatagttaggtcaaaaggcaagcctaatactcttatgggcttgggcccttaactt |
211 |
Q |
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|||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| |
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| T |
22488873 |
ttgtagttttttcatatccttcatagaggcactaacacccttatatatagttaggtcatttg-caaacctaatactcttatgggcttgggcccttaactt |
22488971 |
T |
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| Q |
212 |
acagactcatggtccaataatgcttaaaacataattcttagtccaggttggcttagtagtgtttcttttgggcct |
286 |
Q |
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| T |
22488972 |
acagactcatggtccaataatgcttaaaacttaattcttagtccaagttggcttagtagtgtttcttttgggcct |
22489046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 181 - 286
Target Start/End: Original strand, 22483520 - 22483625
Alignment:
| Q |
181 |
taatactcttatgggcttgggcccttaacttacagactcatggtccaataatgcttaaaacataattcttagtccaggttggcttagtagtgtttctttt |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22483520 |
taatactcttatgggcttgggcccttaacttacagactcatggtccaataatgcttaaaacataattcttagtccaagttggcttagtagtgtttctttt |
22483619 |
T |
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| Q |
281 |
gggcct |
286 |
Q |
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||||| |
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| T |
22483620 |
aggcct |
22483625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 22483390 - 22483434
Alignment:
| Q |
32 |
tgatggattcacgtaggggattcaacagaaattcaacgttatacc |
76 |
Q |
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| T |
22483390 |
tgatggattcacgtaggggattcaacagatattcaacgttatacc |
22483434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 22488791 - 22488835
Alignment:
| Q |
32 |
tgatggattcacgtaggggattcaacagaaattcaacgttatacc |
76 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22488791 |
tgatggattcacgtgggggattcaacagaaattcaacgttatacc |
22488835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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