View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14974_low_1 (Length: 427)
Name: NF14974_low_1
Description: NF14974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14974_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 39878439 - 39878040
Alignment:
| Q |
1 |
cccaaagtgaagttaatggagatgtgacgcggtggttgcggaccgtgaaaccgggttcgccgccgacgtcggcaggtaagccgcggcgtttgcggttgtt |
100 |
Q |
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| T |
39878439 |
cccaaagtgaagttaatggagatgtgacgcggtggttgcggaccgtgaaaccgggttcgccgccgacgtcggcaggtaagccgcggcgtttgcggttgtt |
39878340 |
T |
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| Q |
101 |
ggagttgcggaagaggaggatgacgagaggaacgatgagtccggcaatgtaggcgttcattgttgttgatctgaatctgaatgattcagttgaaaacaaa |
200 |
Q |
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| T |
39878339 |
ggagttgcggaagaggaggatgacgagaggaactatgaggccggcaatgtaggcgttcattgttgttgatctgaatctgaatgattcagttgaaaacaaa |
39878240 |
T |
|
| Q |
201 |
gtaatgagagtgagggagagaggtttatgaatggagctgcattagatgaaagcaatttagaaagagtagggcggaaataacaagagaaaggggtttggaa |
300 |
Q |
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| T |
39878239 |
gtaatgagagtgaggaagagaggtttatgaatggagctgcattagatgaaagcaatttagaaagagtggggcggaaataacaagagaaaggggtttggaa |
39878140 |
T |
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| Q |
301 |
tttcagaaactcaatgcaattggttttatcatcggtccatctaatgttgtgttttcaaatgtgggtcatagttcttaaattggttaaaaatgttgatatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39878139 |
tttcagaaactcaatgcaattggttttatcatcggtccatctaatgttgtgttttcaaatgtgggtcatagttcttaaattggttaaaaatgttgatatt |
39878040 |
T |
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