View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14974_low_4 (Length: 310)
Name: NF14974_low_4
Description: NF14974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14974_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 22 - 304
Target Start/End: Original strand, 38920824 - 38921127
Alignment:
| Q |
22 |
tgaggtatgaataagttat---ttattgttgatttcccaaccataaacatttgtttgctatgcagccatctggatgcttgtttaagtagattatagagat |
118 |
Q |
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| T |
38920824 |
tgaggtatgaataagttattatttattgttgatttcccaaccataaacatttgtttgctatgcagccatctggatgcttgtttaagtagattatagagat |
38920923 |
T |
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| Q |
119 |
agacagacaatgacattaagctaagctggtggtacccatagaaactaagattttaatgcatgtttcagtatgtaaaaaattgtggatttttaagtgcact |
218 |
Q |
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| T |
38920924 |
agacagacaatgacattaagctaagctggtggtacccatagaaactaagattttaatgcatgtttcagtatgtaaaaaattgtggatttttaagtgcact |
38921023 |
T |
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| Q |
219 |
attggtaaaccaatattagatatccgtt------------------agtaatgaggctttaatgaacatgtttttatatggaaactccttttgttgatga |
300 |
Q |
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| T |
38921024 |
attggtaaaccaatattagatatccgtttatcgctaagcactggtgagtaatgaggctttaatgaacatgtttttatatggaaactccttttgttgaaga |
38921123 |
T |
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| Q |
301 |
tgtc |
304 |
Q |
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|||| |
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| T |
38921124 |
tgtc |
38921127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 10544702 - 10544869
Alignment:
| Q |
22 |
tgaggtatgaataagttatttattgttgatttcccaaccataaacatttgtttgctatgcagccatctggatgcttgtttaagtagattatagagataga |
121 |
Q |
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||||||||||||||||||||||||||| |||| || |||||||||||||||||| |||| || ||||||||||| ||||| ||||| ||||||||||||| |
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| T |
10544702 |
tgaggtatgaataagttatttattgttaattttccgaccataaacatttgtttgttatgaagtcatctggatgcatgttttagtaggttatagagataga |
10544801 |
T |
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| Q |
122 |
cagacaatgacattaagctaagctggtggtacccatagaaactaagattttaatgcatgtttcagtat |
189 |
Q |
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| T |
10544802 |
caggcagtggcattaagctaagctggtggtacccataggaactaaaattttaatgcttgtttgagtat |
10544869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 10545135 - 10545188
Alignment:
| Q |
251 |
atgaggctttaatgaacatgtttttatatggaaactccttttgttgatgatgtc |
304 |
Q |
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||||||||||| | ||||| ||||||||||||||||||||||||||| |||||| |
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| T |
10545135 |
atgaggctttactaaacatatttttatatggaaactccttttgttgaagatgtc |
10545188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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