View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14974_low_8 (Length: 227)
Name: NF14974_low_8
Description: NF14974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14974_low_8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 22041397 - 22041644
Alignment:
| Q |
8 |
catcctctccttttcatcttcttcattttgtgttttgcttccatcatggttgtaggtaa-ttaccaacaacaacaaaaaatagagttgtgttatgc---- |
102 |
Q |
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| T |
22041397 |
catcttctccttttcatcttcttaattttgtgttttggttccatcatggttgtaggtaaattaccaacaacaa---aaaatagagtcgtgtactggtgtt |
22041493 |
T |
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| Q |
103 |
-----------atgcatgcatatttttagctgtttaattaataaaa-------atatatacaagttgctaaatcatcaagaattcatacctcttgtgcct |
184 |
Q |
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| T |
22041494 |
tgatgtttgatatgcatgcatatttttaactgtttaattaaaaatgtttatgtatatatacaagttgctaaatcatcaacaattcatacctcttgtgcct |
22041593 |
T |
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| Q |
185 |
aataattacaat--------ccttaatcaaaatcctatctatgattttatt |
227 |
Q |
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| T |
22041594 |
aataattacaatgattgttagcttaatcaaaatcatatctatgattttatt |
22041644 |
T |
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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 22017543 - 22017484
Alignment:
| Q |
138 |
atatatacaagttgctaaatcatcaagaattcatacctcttgtgcctaataattacaatc |
197 |
Q |
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| T |
22017543 |
atatatacaagttgctaaatcatcaagaattcatatctcttgtgcctaataattagaatc |
22017484 |
T |
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