View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14975_high_10 (Length: 414)
Name: NF14975_high_10
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14975_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 12 - 397
Target Start/End: Original strand, 772450 - 772835
Alignment:
| Q |
12 |
attatactctgaacactcttccacctttgtatgaaccattcaaaatttcttacaacgcacttaaaaaattatcaattaatgaactcttgaccatgtgtgt |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
772450 |
attatactctgaacactcttccacctttgtatgaaccattcaaaatttcttacaacgcacttaaaaaattatcaattaatgaactcttgaccatgtgtgt |
772549 |
T |
|
| Q |
112 |
tcaagaagaagaaaggttgaagatgaaaatgaattggtatactctaattaagacaattgtgggaaaagacatcaatttgaaccaagtcaagaaaaaggga |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
772550 |
tcaagaagaagaaaggttgaagatgaaaatgaattggtatactctaattaagacaattgtgggaaaagacatcaatttgaaccaagtcaagaaaaaggga |
772649 |
T |
|
| Q |
212 |
aaacctaaaatacctcccaaatgtggaattaagaaaagttcaagtgttcttttcgtaataaaaagtgacacatgaatactcattgctctaatttcataaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
772650 |
aaacctaaaatacctcccaaatgtggaattaagaaaagttcaagtgttcttttcgtaataaaaagtgacacatgaatactcattgctctaatttcataaa |
772749 |
T |
|
| Q |
312 |
tggcttgaaaataaaagcataaccatctttgttataagtcttatatggttgaggtcggttataacacgtaatggattgattatagt |
397 |
Q |
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| T |
772750 |
tggcttgaaaataaaagcataaccatctttgttataagtcttatatggttgaggtcgtttataacacgtaatggattgattatagt |
772835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 271
Target Start/End: Complemental strand, 36836664 - 36836404
Alignment:
| Q |
12 |
attatactctgaacactcttccacctttgtatgaaccattcaaaatttcttacaacgcacttaaa---aaattatcaattaatgaactcttgaccatgtg |
108 |
Q |
| |
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|||||| | |||| || ||||||||| |||||||||| | ||||||||||||||| ||| |||| |||| |||||||||||||||||||||||||| |
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| T |
36836664 |
attatattttgaatacccttccacctccgtatgaaccactaaaaatttcttacaacacacataaagaaaaatggtcaattaatgaactcttgaccatgtg |
36836565 |
T |
|
| Q |
109 |
tgttcaagaagaagaaaggttgaagatgaaaatgaattggtatactctaattaagacaattgtgggaaaagacatcaatttgaaccaagtcaagaaaaag |
208 |
Q |
| |
|
|||||||||||||||||||||| | || |||| ||| |||||||||| || ||| || |||||||| ||||| | || |||||| | |||| ||||| |
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| T |
36836564 |
tgttcaagaagaagaaaggttggcggtggaaataaatgggtatactctgatgaag---atagtgggaaaggacatgatttcgaaccatgccaaggaaaag |
36836468 |
T |
|
| Q |
209 |
ggaaaacctaaaatacctcccaaatgtggaattaag-aaaagttcaagtgttcttttcgtaata |
271 |
Q |
| |
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|| ||| ||||||||||||| | ||||||||||| |||||||||| ||||| ||| |||||| |
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| T |
36836467 |
gggaaaggtaaaatacctcccgatggtggaattaagaaaaagttcaaatgttcattttgtaata |
36836404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 7452585 - 7452700
Alignment:
| Q |
19 |
tctgaacactcttccacctttgtatgaaccattcaaaatttcttacaacgcacttaaa---aaattatcaattaatgaactcttgaccatgtgtgttcaa |
115 |
Q |
| |
|
||||||| ||||||||||| |||| ||| ||||| |||||||| ||| ||| ||| |||| ||||||||||||||| ||||||||||||||| | |
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| T |
7452585 |
tctgaactctcttccacctgaatatggacctttcaagatttcttataacacacataaggacaaatggtcaattaatgaactcctgaccatgtgtgttcga |
7452684 |
T |
|
| Q |
116 |
gaagaagaaaggttga |
131 |
Q |
| |
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||||||| |||||||| |
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|
| T |
7452685 |
gaagaaggaaggttga |
7452700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 51981887 - 51981637
Alignment:
| Q |
12 |
attatactctgaacactcttccacctttgtatgaaccattcaaaatttcttacaacgcacttaaa----aaattatcaattaatgaactcttgaccatgt |
107 |
Q |
| |
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|||||| | |||| || ||||||||| |||||||||| | ||||||||||||||| ||| |||| |||| ||||||||||||||||||||| ||| |
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| T |
51981887 |
attatattttgaatacccttccacctccgtatgaaccactaaaaatttcttacaacacacataaagaaaaaatggtcaattaatgaactcttgaccctgt |
51981788 |
T |
|
| Q |
108 |
gtgttcaagaagaagaaaggttgaagatgaaaatgaattggtatactctaattaagacaattgtgggaaaagacatcaatttgaaccaagtcaagaaaaa |
207 |
Q |
| |
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|||||||| ||||||||||||| | || |||||||| |||||| | | || ||| || |||||||| ||||| | || |||||||| |||| |||| |
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|
| T |
51981787 |
gtgttcaaaaagaagaaaggtttgcggtggaaatgaatgggtatattttgatgaag---atagtgggaaaggacatgatttcgaaccaagccaaggaaaa |
51981691 |
T |
|
| Q |
208 |
gggaaaacctaaaatacctcccaaatgtggaattaag-aaaagttcaagtgttc |
260 |
Q |
| |
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||| ||| ||||||||||||| | ||||||||||| |||||| ||||||||| |
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|
| T |
51981690 |
ggggaaaggtaaaatacctcccgatggtggaattaagaaaaagtccaagtgttc |
51981637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 248
Target Start/End: Original strand, 7925780 - 7926016
Alignment:
| Q |
12 |
attatactctgaacactcttccacctttgtatgaaccattcaaaatttcttacaacgcacttaaa--aaatta-tcaattaatgaactcttgaccatgtg |
108 |
Q |
| |
|
|||||| | ||||||| ||||||||| ||||||||||| ||| ||||||||||| || |||| ||||| || | ||||||||| ||||||||||| |
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|
| T |
7925780 |
attatattttgaacacccttccacctccatatgaaccattaaaattttcttacaacacatataaagaaaattggtcgaataatgaacttttgaccatgtg |
7925879 |
T |
|
| Q |
109 |
tgttcaagaagaagaaaggttgaagatgaaaatgaattggtatactctaattaagacaattgtgggaaaagacatcaatttgaaccaagtcaagaaaaag |
208 |
Q |
| |
|
|||| ||||||||||||||||| |||| |||||||| ||||||||||||| || ||| || |||| ||||| | || |||||||| |||| ||||| |
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| T |
7925880 |
tgtttaagaagaagaaaggttggcgatggaaatgaatgggtatactctaataaa---tattatgtgaaaggacatgatttcgaaccaagccaaggaaaag |
7925976 |
T |
|
| Q |
209 |
ggaaaacctaaaatacctcccaaatgtggaattaagaaaa |
248 |
Q |
| |
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| ||| ||||||| |||| || ||||||||||||||| |
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| T |
7925977 |
aggaaaggtaaaatatctccggaaggtggaattaagaaaa |
7926016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 19158338 - 19158223
Alignment:
| Q |
19 |
tctgaacactcttccacctttgtatgaaccattcaaaatttcttacaacgcacttaaa---aaattatcaattaatgaactcttgaccatgtgtgttcaa |
115 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||||| |||||||| ||| ||| ||| |||| ||||||||||||||| ||||||||||||||||| |
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|
| T |
19158338 |
tctgaacactcttccacctgaatatggacctttcaagatttcttataacacacataaggacaaatggtcaattaatgaactcctgaccatgtgtgttcaa |
19158239 |
T |
|
| Q |
116 |
gaagaagaaaggttga |
131 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
19158238 |
gaagaaggaaggttga |
19158223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 18476827 - 18476942
Alignment:
| Q |
19 |
tctgaacactcttccacctttgtatgaaccattcaaaatttcttacaacgcacttaaa---aaattatcaattaatgaactcttgaccatgtgtgttcaa |
115 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||||| |||||||| ||| ||| ||| |||| |||||||| |||||| ||||||||||||||||| |
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|
| T |
18476827 |
tctgaacactcttccacctgaatatggacctttcaagatttcttataacacacataaggacaaatggtcaattaaagaactcctgaccatgtgtgttcaa |
18476926 |
T |
|
| Q |
116 |
gaagaagaaaggttga |
131 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
18476927 |
gaagaaggaaggttga |
18476942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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