View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14975_high_13 (Length: 368)
Name: NF14975_high_13
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14975_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 47730959 - 47731305
Alignment:
| Q |
1 |
ttagcagtgtagatgcaatttttgttatgagtccatatgaatgcgtcctctacagaagcattgaaattgagttgcatattatttatgagatctatggcaa |
100 |
Q |
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| T |
47730959 |
ttagcagtgtagatgcaatttttgttatgagtccatatgaatgcgttctctgcagaagcattgaaattgagttgcatattatttatgaggtctatggcaa |
47731058 |
T |
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| Q |
101 |
atgagggaagctgagtgtaaaggatgtgagcatgggggctgccagaagagaaaacatctttaaccgacagcaacatatcatgaatgtcaatgcagggagt |
200 |
Q |
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| T |
47731059 |
atgagggaagctgagtgtaaagaatgtgagcatgggggctgccagaagagaatacatctttaactgacagcaacatatcatgaatgtcaatgcagggagc |
47731158 |
T |
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| Q |
201 |
aagggactctatgaaaccaagagaacatcaagggcatgaccagaaagaggaagaa-ctgacccattcatagaaatgtagctcattctgcatatgatgaga |
299 |
Q |
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| T |
47731159 |
aagggactctatgaaacgaagagaacaccaagggcatgaccagaaagaggaagaacctgacccgttcatagaaatgtagcccattctgcatatgatgaga |
47731258 |
T |
|
| Q |
300 |
cttttcttcattttgtgtgtgtgattgaacccattctaagcacttgt |
346 |
Q |
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| T |
47731259 |
cttttcttcattgtgtgtgtgtgattgaacccattctaagcacttgt |
47731305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 26334726 - 26334871
Alignment:
| Q |
18 |
atttttgttatgagtccatatgaatgcgtcctctacagaagcattgaaattgagttgcatattatttatgagatctatggcaaatgagggaagctgagtg |
117 |
Q |
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| T |
26334726 |
atttttgttatgagtcgatatgaatacatcctctagagaagcattgaacctgtgttgcatattatttatgaggtctatgacaaatgaaggtagctgaatg |
26334825 |
T |
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| Q |
118 |
taaaggatgtgagcatgggggctgccagaagagaaaacatctttaa |
163 |
Q |
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| T |
26334826 |
taaagaatttgtgcatggaggccgttaaaagagaaaacatctttaa |
26334871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 346
Target Start/End: Complemental strand, 50823520 - 50823467
Alignment:
| Q |
291 |
atgatgagacttttcttcattttgtgtgtgtgattgaacccattctaagcacttgt |
346 |
Q |
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| T |
50823520 |
atgatgagacttttcttcatt--gtgtgcgtgattgcacccattctaagcacttgt |
50823467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 58 - 256
Target Start/End: Complemental strand, 24873327 - 24873130
Alignment:
| Q |
58 |
gcattgaaattgagttgcatattatttatgagatctatggcaaatgagggaagctgagtgtaaaggatgtgagcatgggggctgccagaagagaaaacat |
157 |
Q |
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||||||||||||| |||||||||||| ||||| ||||||| || || || || ||||||||||||||||| |||| ||||||| |||||||||| |||| |
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| T |
24873327 |
gcattgaaattgaattgcatattattgatgaggtctatggtgaaagaaggcagttgagtgtaaaggatgtgtgcat-ggggctggcagaagagaatacat |
24873229 |
T |
|
| Q |
158 |
ctttaaccgacagcaacatatcatgaatgtcaatgcagggagtaagggactctatgaaaccaagagaacatcaagggcatgaccagaaagaggaagaac |
256 |
Q |
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||||||| |||| | |||||||||||||||| |||| | ||||||| |||||||||||||||||| |||||||| ||||| ||||||||||||| |
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| T |
24873228 |
ctttaactgacaattgtaaatcatgaatgtcaatgtagggtgcaagggaccctatgaaaccaagagaactccaagggcaagaccaaaaagaggaagaac |
24873130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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