View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14975_high_21 (Length: 321)
Name: NF14975_high_21
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14975_high_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 15 - 213
Target Start/End: Original strand, 14396214 - 14396411
Alignment:
| Q |
15 |
aatatggaatccttaaagtgacttagggaagcaacaaaatggaaagtgatataagaatccaatttgaaaggaaacttgaattcttaacataaaatccaaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14396214 |
aatatggaatccttaaagtgacttagggaagcaacaaaatggaaagtgatataagaatccaatttgaaaggaaacttgaattcttaacataaaatccaaa |
14396313 |
T |
|
| Q |
115 |
cacatccaatagttgttgaacatgattaagatggagcttcagactaacagatagatgtcttgccacaatgnnnnnnntggaatttggagagtaaatcag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14396314 |
cacatccaatagttgttgaacatgattaagatggagcttcagactaacagatagatgtcttgccacaatg-aaaaaatggaatttggagagtaaatcag |
14396411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University