View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14975_high_25 (Length: 287)
Name: NF14975_high_25
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14975_high_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 29438353 - 29438085
Alignment:
| Q |
1 |
atcaacagaatcttccacaattgcaacaacagctttcacaactgcgactgcaacatccacaacttcctcagcagcagcaagaaatgcaacaacaacgtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29438353 |
atcaacagaatcttccacaattgcaacaacagctttcacaactgcgactgcaacatccacaacttcctcagcagcagcaagaaatgcaacaacaacatca |
29438254 |
T |
|
| Q |
101 |
acataatcttccacaattgctgcatcagttttcacaactgcaactgcagcagcagatggttggtgtcggaatgggtcaagcctgtgttcaaggtcctgaa |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
29438253 |
acagaatcttccacaattgctgcatcagttttcacaactgcaactgcagcagcagatggttggtgtcggaatgggtcaaacctgtgttcaaggtcctgga |
29438154 |
T |
|
| Q |
201 |
cactcacaaatggtttcccagggtcaagtttcatcacaacgagctacaaacattgatggaaggaatttc |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29438153 |
cactcacaaatggtttcccagggtcaagtttcatcacaacgagctacaaacattgatggaaggaatttc |
29438085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 148
Target Start/End: Complemental strand, 29438423 - 29438302
Alignment:
| Q |
30 |
cagctttcacaactgcgactgcaacatccacaacttcctca---gcagcagcaagaaatgcaacaacaacgtcaacataatcttccacaattgctgcatc |
126 |
Q |
| |
|
|||||||||||||| ||| |||| | || |||||||||||| ||||||||||||||| |||||||||| |||||| |||||||||||||||| || | |
|
|
| T |
29438423 |
cagctttcacaacttcgattgcagcgtcaacaacttcctcatcagcagcagcaagaaatacaacaacaacatcaacagaatcttccacaattgcaacaac |
29438324 |
T |
|
| Q |
127 |
agttttcacaactgcaactgca |
148 |
Q |
| |
|
|| |||||||||||| |||||| |
|
|
| T |
29438323 |
agctttcacaactgcgactgca |
29438302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 29438520 - 29438453
Alignment:
| Q |
29 |
acagctttcacaactgcgactgcaacatccacaacttcctcagcagcagcaagaaatgcaacaacaac |
96 |
Q |
| |
|
||||||||| |||| ||||||||| | || ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29438520 |
acagctttcgcaacggcgactgcagcttcaacaacttcctcagcagcagcaagaaatgcaacatcaac |
29438453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 269
Target Start/End: Original strand, 22526011 - 22526137
Alignment:
| Q |
146 |
gcagcagcagatggttggtgtcggaatgggtcaagcctgtgttcaaggtcctgaa---cactcacaaatggtttcccagggtcaagtttcatcacaacga |
242 |
Q |
| |
|
|||||| || |||||||||| |||||||||||| ||| |||||||||||||| | ||||||||||||||| ||||| |||||||||||||| || |
|
|
| T |
22526011 |
gcagcaacaaatggttggtgctggaatgggtcaaacctatgttcaaggtcctggggggcgctcacaaatggtttctcagggacaagtttcatcacaggga |
22526110 |
T |
|
| Q |
243 |
gctacaaacattgatggaaggaatttc |
269 |
Q |
| |
|
||||||||||||| |||| |||||||| |
|
|
| T |
22526111 |
gctacaaacattggtggagggaatttc |
22526137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 252
Target Start/End: Complemental strand, 2785203 - 2785097
Alignment:
| Q |
146 |
gcagcagcagatggttggtgtcggaatgggtcaagcctgtgttcaaggtcctgaacactcacaaatggtttcccagggtcaagtttcatcacaacgagct |
245 |
Q |
| |
|
|||||| ||||||||||||| |||| ||||||| || |||||||| ||||| | |||||||| ||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
2785203 |
gcagcaacagatggttggtgctggaaggggtcaaaactatgttcaagatcctgggcgctcacaaacagtttctcagggacaagtttcatcacaaggagct |
2785104 |
T |
|
| Q |
246 |
acaaaca |
252 |
Q |
| |
|
||||||| |
|
|
| T |
2785103 |
acaaaca |
2785097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University