View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14975_high_28 (Length: 269)

Name: NF14975_high_28
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14975_high_28
NF14975_high_28
[»] chr4 (2 HSPs)
chr4 (10-251)||(42677369-42677599)
chr4 (27-81)||(45873296-45873350)
[»] chr5 (2 HSPs)
chr5 (10-83)||(26331014-26331087)
chr5 (53-89)||(40681092-40681128)
[»] chr2 (3 HSPs)
chr2 (23-89)||(40900370-40900436)
chr2 (21-89)||(6705684-6705752)
chr2 (117-165)||(40900464-40900512)
[»] chr7 (1 HSPs)
chr7 (15-82)||(21590439-21590506)
[»] chr1 (2 HSPs)
chr1 (21-89)||(15496062-15496130)
chr1 (212-248)||(48968805-48968841)
[»] scaffold0092 (1 HSPs)
scaffold0092 (10-76)||(23348-23414)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 42677599 - 42677369
Alignment:
Q  10 agcagcacagaccaacacaaccaaaaatcaacatacaagctcttcaacatcatcaccacaaacaaaactcaccgtcacatnnnnnnnnnnnnnnnnttag 109  Q
    |||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||                ||||    
T  42677599 agcaccacaaaccaacacaaccaaaaatcaacatacgagctcttcaacatcatcaccacaaacaaaactcaccgtcacataaaaa-----------ttag 42677511  T
Q  110 acaaagctgtatgaattaacctccccttacaatatttttcaattgatggctagcgtggttcataatagaatcggtacaaacacttaaaaaacaaacatgg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42677510 acaaagctgtatgaattaacctccccttacaatatttttcaattgatggctagcgtggttcacaatagaatcggtacaaacacttaaaaaacaaacatgg 42677411  T
Q  210 cgtgaacatgttctgaaggtaccacgaaaacatgtagtatat 251  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  42677410 cgtgaacatgttctgaaggtaccacgaaaacatgtagtatat 42677369  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 45873296 - 45873350
Alignment:
Q  27 caaccaaaaatcaacatacaagctcttcaacatcatcaccacaaacaaaactcac 81  Q
    |||||||||| |||||||| ||||| |||||||||||||||||||||||||||||    
T  45873296 caaccaaaaagcaacatacgagctcctcaacatcatcaccacaaacaaaactcac 45873350  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 26331087 - 26331014
Alignment:
Q  10 agcagcacagaccaacacaaccaaaaatcaacatacaagctcttcaacatcatcaccacaaacaaaactcaccg 83  Q
    |||| |||| ||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||    
T  26331087 agcaccacaaaccaacacaactaaaaagcaacatacgagctcctcaacatcatcaccacaaacaaaactcaccg 26331014  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 40681092 - 40681128
Alignment:
Q  53 tcaacatcatcaccacaaacaaaactcaccgtcacat 89  Q
    |||||||||||||||||||||||||||| || |||||    
T  40681092 tcaacatcatcaccacaaacaaaactcatcgccacat 40681128  T

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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 40900370 - 40900436
Alignment:
Q  23 aacacaaccaaaaatcaacatacaagctcttcaacatcatcaccacaaacaaaactcaccgtcacat 89  Q
    |||||||||||||| |||| ||| ||||| ||||||||||||||||||||||||||||||| |||||    
T  40900370 aacacaaccaaaaaacaacttacgagctcctcaacatcatcaccacaaacaaaactcaccgccacat 40900436  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 6705684 - 6705752
Alignment:
Q  21 ccaacacaaccaaaaatcaacatacaagctcttcaacatcatcaccacaaacaaaactcaccgtcacat 89  Q
    |||||| ||| ||||| |||| ||| ||||  ||||||||||||||||||||||||||||||| |||||    
T  6705684 ccaacataacaaaaaaacaacgtacgagcttctcaacatcatcaccacaaacaaaactcaccgccacat 6705752  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 40900464 - 40900512
Alignment:
Q  117 tgtatgaattaacctccccttacaatatttttcaattgatggctagcgt 165  Q
    ||||||||| |||||||| || ||||||||  |||||||||||||||||    
T  40900464 tgtatgaatgaacctccctttgcaatatttcccaattgatggctagcgt 40900512  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 21590506 - 21590439
Alignment:
Q  15 cacagaccaacacaaccaaaaatcaacatacaagctcttcaacatcatcaccacaaacaaaactcacc 82  Q
    ||||||| ||||||||| |||| |||| ||| ||||| |||||||||||||||||||||||| |||||    
T  21590506 cacagacaaacacaaccgaaaaacaacctacgagctcctcaacatcatcaccacaaacaaaaatcacc 21590439  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 15496062 - 15496130
Alignment:
Q  21 ccaacacaaccaaaaatcaacatacaagctcttcaacatcatcaccacaaacaaaactcaccgtcacat 89  Q
    |||||| ||| ||||| |||| ||| ||||  ||||||||||||||||||||||||||||||| |||||    
T  15496062 ccaacataacaaaaaaacaacgtacgagcttctcaacatcatcaccacaaacaaaactcaccgccacat 15496130  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 48968805 - 48968841
Alignment:
Q  212 tgaacatgttctgaaggtaccacgaaaacatgtagta 248  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  48968805 tgaacatgttctgaaggtaccacaaaaacctgtagta 48968841  T

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Target: scaffold0092 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 23348 - 23414
Alignment:
Q  10 agcagcacagaccaacacaaccaaaaatcaacatacaagctcttcaacatcatcaccacaaacaaaa 76  Q
    |||| |||| || |||| ||||||||| |||| ||| ||||| ||||||||| ||||||||||||||    
T  23348 agcaccacaaacgaacataaccaaaaaccaacctacgagctcctcaacatcaacaccacaaacaaaa 23414  T

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