View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14975_high_3 (Length: 586)

Name: NF14975_high_3
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14975_high_3
NF14975_high_3
[»] chr4 (25 HSPs)
chr4 (9-251)||(49378156-49378393)
chr4 (319-565)||(49378460-49378707)
chr4 (26-81)||(19850136-19850191)
chr4 (27-81)||(43386538-43386592)
chr4 (27-78)||(50605462-50605513)
chr4 (27-81)||(44792863-44792917)
chr4 (27-79)||(21436313-21436365)
chr4 (27-79)||(45674310-45674362)
chr4 (27-81)||(9469432-9469485)
chr4 (27-81)||(12790228-12790282)
chr4 (27-76)||(52812976-52813025)
chr4 (27-81)||(7505428-7505482)
chr4 (27-81)||(52705597-52705651)
chr4 (27-80)||(49820383-49820436)
chr4 (30-77)||(36543322-36543369)
chr4 (27-81)||(79764-79818)
chr4 (27-77)||(22183771-22183821)
chr4 (27-81)||(25133937-25133991)
chr4 (27-81)||(48977008-48977062)
chr4 (27-81)||(55892753-55892807)
chr4 (28-81)||(48732039-48732092)
chr4 (41-81)||(28266835-28266875)
chr4 (27-79)||(40797160-40797212)
chr4 (27-79)||(53369068-53369120)
chr4 (31-79)||(54742089-54742137)
[»] chr2 (8 HSPs)
chr2 (27-81)||(36538081-36538135)
chr2 (27-80)||(20986069-20986122)
chr2 (27-79)||(33830896-33830948)
chr2 (27-81)||(27633146-27633200)
chr2 (27-81)||(26435771-26435825)
chr2 (25-81)||(33164632-33164688)
chr2 (27-79)||(44741378-44741430)
chr2 (42-79)||(34116851-34116888)
[»] chr5 (9 HSPs)
chr5 (27-81)||(3805455-3805509)
chr5 (27-81)||(32157467-32157521)
chr5 (30-81)||(38523335-38523386)
chr5 (27-81)||(29322067-29322121)
chr5 (27-81)||(1841059-1841113)
chr5 (27-81)||(27905484-27905538)
chr5 (27-76)||(18879629-18879678)
chr5 (41-81)||(10493383-10493423)
chr5 (25-81)||(22921442-22921498)
[»] chr7 (21 HSPs)
chr7 (27-80)||(666298-666351)
chr7 (27-87)||(26215715-26215775)
chr7 (27-81)||(5776647-5776701)
chr7 (27-81)||(15433633-15433687)
chr7 (27-81)||(36926413-36926467)
chr7 (27-79)||(7443835-7443887)
chr7 (27-81)||(43052286-43052340)
chr7 (27-81)||(45174641-45174695)
chr7 (27-80)||(5795576-5795629)
chr7 (27-79)||(3931431-3931483)
chr7 (27-79)||(37333703-37333755)
chr7 (27-81)||(388431-388485)
chr7 (31-82)||(37106149-37106200)
chr7 (31-82)||(42012264-42012315)
chr7 (25-79)||(223023-223077)
chr7 (43-81)||(17608032-17608070)
chr7 (27-81)||(30918934-30918988)
chr7 (27-81)||(42071524-42071578)
chr7 (27-80)||(17026080-17026133)
chr7 (35-80)||(32239473-32239518)
chr7 (41-81)||(27232479-27232519)
[»] chr6 (7 HSPs)
chr6 (27-80)||(6998581-6998634)
chr6 (27-81)||(7957058-7957112)
chr6 (27-80)||(4442077-4442130)
chr6 (27-81)||(18961849-18961903)
chr6 (27-81)||(7436704-7436758)
chr6 (27-77)||(10346220-10346270)
chr6 (41-81)||(10962518-10962558)
[»] chr3 (9 HSPs)
chr3 (28-81)||(52198780-52198833)
chr3 (27-81)||(39471161-39471215)
chr3 (27-81)||(41609318-41609372)
chr3 (27-86)||(38644306-38644365)
chr3 (27-81)||(39133782-39133836)
chr3 (25-77)||(32688567-32688619)
chr3 (38-81)||(23206993-23207036)
chr3 (27-81)||(5418047-5418101)
chr3 (27-81)||(30740736-30740790)
[»] chr8 (6 HSPs)
chr8 (27-81)||(9413346-9413400)
chr8 (41-80)||(22930940-22930979)
chr8 (31-81)||(27189639-27189689)
chr8 (27-76)||(11161087-11161136)
chr8 (31-79)||(33280724-33280772)
chr8 (41-81)||(34515559-34515599)
[»] scaffold0316 (1 HSPs)
scaffold0316 (27-81)||(18714-18768)
[»] chr1 (15 HSPs)
chr1 (27-81)||(24470596-24470650)
chr1 (41-81)||(44595833-44595873)
chr1 (38-81)||(37441911-37441954)
chr1 (27-81)||(29678186-29678240)
chr1 (27-81)||(32179337-32179391)
chr1 (27-81)||(36418524-36418578)
chr1 (27-81)||(47603491-47603545)
chr1 (31-81)||(14579117-14579167)
chr1 (31-81)||(23916135-23916185)
chr1 (27-81)||(28005739-28005793)
chr1 (27-81)||(35309012-35309066)
chr1 (27-81)||(38061701-38061755)
chr1 (41-81)||(5205206-5205246)
chr1 (27-79)||(24575306-24575358)
chr1 (27-79)||(45654449-45654501)
[»] scaffold0658 (1 HSPs)
scaffold0658 (27-81)||(6475-6529)
[»] scaffold0043 (1 HSPs)
scaffold0043 (41-81)||(16496-16536)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 1e-92; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 49378156 - 49378393
Alignment:
Q  9 gaagaatattatggaattttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagctatagccaatagtgagagtggagctca 108  Q
    ||||||||||||||||| ||||||| || |||||||||||||||||||| |||||||||||||||||||| ||  |||||||||||||||||||||||||    
T  49378156 gaagaatattatggaatcttatcgattcgagccgagctcagacaggttcggttcgactcgactcatttccggccctagccaatagtgagagtggagctca 49378255  T
Q  109 catatttgagagtattagttaatttcttaccaattgaaccgttacatatgagctgtgattgagaaacctaccggaaacaaaatcaatcatttattaaaaa 208  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||      ||||||||||||||||||||||||||||||||||    
T  49378256 catatttgagagtattagttaacttcttaccaattgaaccattacatatgagctgtgatt------cctaccggaaacaaaatcaatcatttattaaaaa 49378349  T
Q  209 tgattttcaaatgaaactacttaaaacaac-tttcatttgaagc 251  Q
    | |||||||||||||||||||||||||||| |||||||||||||    
T  49378350 ttattttcaaatgaaactacttaaaacaacttttcatttgaagc 49378393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 319 - 565
Target Start/End: Original strand, 49378460 - 49378707
Alignment:
Q  319 caaatgaaaactcgtaaaagtgannnnnnnnaataaaaatcgataatggatttttcaccgaatgacggtatcaaataatttcttaatgtcattgtaaatt 418  Q
    ||||||||||||| |||||||||        |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||    
T  49378460 caaatgaaaactcataaaagtgattttttttaataaaaatcgataatggatttttcaccgaatgacggtatcaaacaagttcttaatgtcatcgtaaatt 49378559  T
Q  419 gtctaaattttgaaatggattttnnnnnnncctaatagtgtcatatttttattcaactcttttatcttattgatctccatctta-ttttgaccatcaaac 517  Q
    ||||||| |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49378560 gtctaaaatttgaaatggattttaaaaaaacctaatagtgtcatatttttattcaactcttttatcttattgatctccatcttatttttgaccatcaaac 49378659  T
Q  518 ggtttaatagagttgctttaaaagatttattacatgctttgtaagaat 565  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  49378660 ggtttaatagagttgctttaaaagatttattgcatgctttgtaagaat 49378707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 19850191 - 19850136
Alignment:
Q  26 tttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  19850191 tttatcgagtcgagccgagctcagacaggttcggttcgactcgactcatttccagc 19850136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 43386592 - 43386538
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  43386592 ttatcgagtcgagtcgagctcagacaggttcagttcgactcgactcatttccagc 43386538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 50605513 - 50605462
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttcc 78  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  50605513 ttatcgagtcgagccgagctcagacaggttcggttcgactcgactcatttcc 50605462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 44792863 - 44792917
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| ||||||||||| |||||||| |||||||||||||||||||||||    
T  44792863 ttatcgagtcgagccgagctcatacaggttcggttcgactcgactcatttccagc 44792917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 21436365 - 21436313
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttcca 79  Q
    |||||||||| |||||| ||||||||||||| |||||||||||||||||||||    
T  21436365 ttatcgagtcgagccgaactcagacaggttcggttcgactcgactcatttcca 21436313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 45674362 - 45674310
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttcca 79  Q
    |||||||||| |||||||||||| ||||||| |||||||||||||||||||||    
T  45674362 ttatcgagtcgagccgagctcaggcaggttcggttcgactcgactcatttcca 45674310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 9469485 - 9469432
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| |||||||||||||||||||| | |||||||||||||||||||||    
T  9469485 ttatcgagtcgagccgagctcagacaggttc-gatcgactcgactcatttccagc 9469432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 12790228 - 12790282
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    ||||||| || |||||||||||||||||||| |||||||||||||||||| ||||    
T  12790228 ttatcgaatcgagccgagctcagacaggttcggttcgactcgactcattttcagc 12790282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 52813025 - 52812976
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcattt 76  Q
    |||||||||| |||||| ||||||||||||| ||||||||||||||||||    
T  52813025 ttatcgagtcgagccgaactcagacaggttcggttcgactcgactcattt 52812976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 7505482 - 7505428
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| ||||||||||||||| ||||   |||||||||||||||||||||    
T  7505482 ttatcgagtcgagccgagctcagacaagttcgactcgactcgactcatttccagc 7505428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 52705651 - 52705597
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| ||||||||||||||| ||||   |||||||||||||||||||||    
T  52705651 ttatcgagtcgagccgagctcagacaagttcgactcgactcgactcatttccagc 52705597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 49820436 - 49820383
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccag 80  Q
    |||||||||| |||||||||||| |||||||  |||||||||| ||||||||||    
T  49820436 ttatcgagtcgagccgagctcaggcaggttcgattcgactcgattcatttccag 49820383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 36543369 - 36543322
Alignment:
Q  30 tcgagtcaagccgagctcagacaggttcagttcgactcgactcatttc 77  Q
    ||||||| ||||||||||||| | |||| |||||||||||||||||||    
T  36543369 tcgagtcgagccgagctcagatacgttcggttcgactcgactcatttc 36543322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 79818 - 79764
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| |||||| || ||||||||||  ||||| ||||||||||||||||    
T  79818 ttatcgagtcgagccgaacttagacaggttcgattcgattcgactcatttccagc 79764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 22183821 - 22183771
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttc 77  Q
    ||||| |||| | |||||||||||||||||| ||||||||||| |||||||    
T  22183821 ttatcaagtcgatccgagctcagacaggttcggttcgactcgattcatttc 22183771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 25133991 - 25133937
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| || ||||||||||||| |||   |||||||||||||||||||||    
T  25133991 ttatcgagtcgagtcgagctcagacagattcgactcgactcgactcatttccagc 25133937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 48977062 - 48977008
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    ||||||| || ||||||| |||| ||| ||| |||||||||||||||||||||||    
T  48977062 ttatcgaatcgagccgagttcaggcagattcggttcgactcgactcatttccagc 48977008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 55892753 - 55892807
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| || |||||||||| || |||  ||||||||||||||||||||||    
T  55892753 ttatcgagtcgagtcgagctcagatagattcgattcgactcgactcatttccagc 55892807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 48732039 - 48732092
Alignment:
Q  28 tatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    ||||||||| ||||||||||| ||  |||||  |||||||||||||||||||||    
T  48732039 tatcgagtcgagccgagctcacacgagttcaactcgactcgactcatttccagc 48732092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 28266835 - 28266875
Alignment:
Q  41 cgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||||| ||||| ||||||||||||||||| ||||    
T  28266835 cgagctcagacatgttcaattcgactcgactcattttcagc 28266875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 40797212 - 40797160
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttcca 79  Q
    |||||||||| || ||||||||||||| |||   |||||||||||||||||||    
T  40797212 ttatcgagtcgagtcgagctcagacagattcgactcgactcgactcatttcca 40797160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 53369120 - 53369068
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttcca 79  Q
    |||||||||  |||||| ||||| ||| ||| |||||||||||||||||||||    
T  53369120 ttatcgagttgagccgaactcaggcagattcggttcgactcgactcatttcca 53369068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 54742137 - 54742089
Alignment:
Q  31 cgagtcaagccgagctcagacaggttcagttcgactcgactcatttcca 79  Q
    ||||||||| ||||||||||||||||   ||||| ||||||||||||||    
T  54742137 cgagtcaagtcgagctcagacaggtttgattcgaatcgactcatttcca 54742089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 36538135 - 36538081
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36538135 ttatcgagtcgagccgagctcagacaggttcagttcgactcgactcatttccagc 36538081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 20986122 - 20986069
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccag 80  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  20986122 ttatcgagtcgagccgagctcagacaggttcggttcgactcgactcatttccag 20986069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 33830948 - 33830896
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttcca 79  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  33830948 ttatcgagtcgagccgagctcagacaggttcggttcgactcgactcatttcca 33830896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 27633200 - 27633146
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    ||||| |||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  27633200 ttatcaagtcgagccgagctcaggcaggttcggttcgactcgactcatttccagc 27633146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 26435825 - 26435771
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    ||||||| || |||||||||||||||| ||| |||||||||||||||||| ||||    
T  26435825 ttatcgaatcgagccgagctcagacagattcggttcgactcgactcattttcagc 26435771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 33164632 - 33164688
Alignment:
Q  25 ttttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||||| |||| |  |||||||| ||| |||||||||||||||||||||||    
T  33164632 ttttatcgagtcgagccaaattcagacagattcggttcgactcgactcatttccagc 33164688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 44741378 - 44741430
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttcca 79  Q
    ||||| |||| |||||||||||||||||||| |||| |||| |||||||||||    
T  44741378 ttatcaagtcgagccgagctcagacaggttcggttcaactcaactcatttcca 44741430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 34116851 - 34116888
Alignment:
Q  42 gagctcagacaggttcagttcgactcgactcatttcca 79  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  34116851 gagctcagacaggttcgattcgactcgactcatttcca 34116888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 3805455 - 3805509
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  3805455 ttatcgagtcgagccgagctcagacaggttcggttcgactcgactcatttccagc 3805509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 32157467 - 32157521
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  32157467 ttatcgagtcgagccgagcccagacaggttcagttcgactcgactcatttccagc 32157521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 38523335 - 38523386
Alignment:
Q  30 tcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  38523335 tcgagtcgagccgagctcagacaggttcggttcgactcgactcatttccagc 38523386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 29322121 - 29322067
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  29322121 ttatcgagtcgagccgagctcaggcaggttcggttcgactcgactcatttccagc 29322067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 1841059 - 1841113
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| || ||||||||||||||||  |||||||||||||||||||||||    
T  1841059 ttatcgagtcgagtcgagctcagacaggtttggttcgactcgactcatttccagc 1841113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 27905538 - 27905484
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    ||||| |||| ||||||||||||| | |||| |||||||||||||||||||||||    
T  27905538 ttatcaagtcgagccgagctcagataagttcggttcgactcgactcatttccagc 27905484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 18879678 - 18879629
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcattt 76  Q
    |||||||||| |||||| ||||||||| ||| ||||||||||||||||||    
T  18879678 ttatcgagtcgagccgaactcagacagattcggttcgactcgactcattt 18879629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 10493423 - 10493383
Alignment:
Q  41 cgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  10493423 cgagctcagacaggttcgattcgactcgactcatttccagc 10493383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 22921498 - 22921442
Alignment:
Q  25 ttttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||||  || |||||||||||||| ||  ||||||||||||||||||||||    
T  22921498 ttttatcgagtggagtcgagctcagacaggctcgattcgactcgactcatttccagc 22921442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 666298 - 666351
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccag 80  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  666298 ttatcgagtcaagccgagctcagacatgttcggttcgactcgactcatttccag 666351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 26215775 - 26215715
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagctatagc 87  Q
    |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||| ||||    
T  26215775 ttatcgagtcgagccgagctcaggcaggttcggttcgactcgactcatttccagctctagc 26215715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 5776647 - 5776701
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  5776647 ttatcgagtcgagccgagctcaggcaggttcggttcgactcgactcatttccagc 5776701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 15433687 - 15433633
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    ||||||||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  15433687 ttatcgagtcaagccgagctcaggcaggtttggttcgactcgactcatttccagc 15433633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 36926467 - 36926413
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| ||||||||||||||||||||  ||||||||||||||||||||||    
T  36926467 ttatcgagtcgagccgagctcagacaggttcgattcgactcgactcatttccagc 36926413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 7443887 - 7443835
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttcca 79  Q
    |||||||||| |||||||||||||||| ||| |||||||||||||||||||||    
T  7443887 ttatcgagtcgagccgagctcagacagattcggttcgactcgactcatttcca 7443835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 43052340 - 43052286
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| |||||||||||| ||||||| ||||||||||||| |||||||||    
T  43052340 ttatcgagtcgagccgagctcaggcaggttcggttcgactcgactgatttccagc 43052286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 45174695 - 45174641
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||    
T  45174695 ttattgagtcgagccgagctcagacaggttcggttcgactcgactcattttcagc 45174641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 5795576 - 5795629
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccag 80  Q
    |||||||||| |||||||||||| |||||||  |||||||||||||||||||||    
T  5795576 ttatcgagtcgagccgagctcaggcaggttcgattcgactcgactcatttccag 5795629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 3931431 - 3931483
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttcca 79  Q
    |||||||||| |||||||||||||||||||| ||| ||||| |||||||||||    
T  3931431 ttatcgagtcgagccgagctcagacaggttcggttggactcaactcatttcca 3931483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 37333755 - 37333703
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttcca 79  Q
    |||||||||| |||| ||||||| ||||||| |||||||||||||||||||||    
T  37333755 ttatcgagtcgagccaagctcaggcaggttcggttcgactcgactcatttcca 37333703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 388485 - 388431
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| | |||||||||| || |||| |||||||||||||||||||||||    
T  388485 ttatcgagtcgaaccgagctcaggcaagttcggttcgactcgactcatttccagc 388431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 37106200 - 37106149
Alignment:
Q  31 cgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagct 82  Q
    |||||| || ||| |||||||||||||  |||||||||||||||||||||||    
T  37106200 cgagtcgagtcgaactcagacaggttcgattcgactcgactcatttccagct 37106149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 42012264 - 42012315
Alignment:
Q  31 cgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagct 82  Q
    |||||| || |||||||||||| ||||  |||||||||||||||||||||||    
T  42012264 cgagtcgagtcgagctcagacaagttcgattcgactcgactcatttccagct 42012315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 223023 - 223077
Alignment:
Q  25 ttttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttcca 79  Q
    |||||||||||| |||| |||||||||||||||  | |||||| |||||||||||    
T  223023 ttttatcgagtcgagccaagctcagacaggttcgatccgactcaactcatttcca 223077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 17608070 - 17608032
Alignment:
Q  43 agctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  17608070 agctcagacaggttcaattcgactctactcatttccagc 17608032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 30918988 - 30918934
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||  || |||||||||| |||||| ||||||||||| |||||||||||    
T  30918988 ttatcgagttgagtcgagctcagataggttcggttcgactcgattcatttccagc 30918934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 42071578 - 42071524
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||| ||||| ||||||||||||||| |||  |||||||||||||||||| ||||    
T  42071578 ttattgagtcgagccgagctcagacatgtttggttcgactcgactcattttcagc 42071524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 17026080 - 17026133
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccag 80  Q
    |||||||||| || |||||||||||| ||||   ||||||||||||||||||||    
T  17026080 ttatcgagtcgagtcgagctcagacaagttcgactcgactcgactcatttccag 17026133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 32239518 - 32239473
Alignment:
Q  35 tcaagccgagctcagacaggttcagttcgactcgactcatttccag 80  Q
    ||||| |||||||| |||| |||| |||||||||||||||||||||    
T  32239518 tcaagtcgagctcaaacagattcaattcgactcgactcatttccag 32239473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 27232479 - 27232519
Alignment:
Q  41 cgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    ||||||||||||| |||  ||||||||||||||||||||||    
T  27232479 cgagctcagacagattcgattcgactcgactcatttccagc 27232519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 6998634 - 6998581
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccag 80  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  6998634 ttatcgagtcgagccgagctcagacaggttcggttcgactcgactcatttccag 6998581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 7957112 - 7957058
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| |||||||||||||||||||| | |||||||||||||||||||||    
T  7957112 ttatcgagtcgagccgagctcagacaggttcgggtcgactcgactcatttccagc 7957058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 4442077 - 4442130
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccag 80  Q
    |||||||||| ||  |||||||||||||||| ||||||||||||||||||||||    
T  4442077 ttatcgagtcgagttgagctcagacaggttcggttcgactcgactcatttccag 4442130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 18961903 - 18961849
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| |||||||||||| |||||||  || |||||||||||||||||||    
T  18961903 ttatcgagtcgagccgagctcaggcaggttcgatttgactcgactcatttccagc 18961849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 7436758 - 7436704
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| || |||||||||||||||||  |||||||||||| |||| ||||    
T  7436758 ttatcgagtcgagtcgagctcagacaggttcgattcgactcgacttattttcagc 7436704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 10346270 - 10346220
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttc 77  Q
    ||||||| || ||||||||||| |||||||| |||||||| ||||||||||    
T  10346270 ttatcgaatcgagccgagctcaaacaggttcggttcgacttgactcatttc 10346220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 10962518 - 10962558
Alignment:
Q  41 cgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| ||||||  ||||||||||||||||||||||    
T  10962518 cgagctcagataggttcgattcgactcgactcatttccagc 10962558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 52198833 - 52198780
Alignment:
Q  28 tatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  52198833 tatcgagtcgagccgagctcagacaggttcggttcgactcgactcatttccagc 52198780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 39471161 - 39471215
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| ||||||| |||||||||||| |||||||||||||||||||||||    
T  39471161 ttatcgagtcgagccgagttcagacaggttcggttcgactcgactcatttccagc 39471215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 41609372 - 41609318
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  41609372 ttatcgagtcgagccgagctcaggcaggttcggttcgactcgactcatttccagc 41609318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 38644306 - 38644365
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagctatag 86  Q
    ||||| |||| |||||||||||||||||||| ||||||||| ||||||||||||| ||||    
T  38644306 ttatctagtcgagccgagctcagacaggttcggttcgactccactcatttccagccatag 38644365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 39133836 - 39133782
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||    
T  39133836 ttatcgagtcgagctgagctcagacaggttcagttcgactcgaatcattttcagc 39133782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 32688619 - 32688567
Alignment:
Q  25 ttttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttc 77  Q
    |||||||||||| |||||||||||||||| ||| |||| ||||||||||||||    
T  32688619 ttttatcgagtcgagccgagctcagacagattcggttcaactcgactcatttc 32688567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 23206993 - 23207036
Alignment:
Q  38 agccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||||||||||||| |||||||||||||||||| ||||    
T  23206993 agccgagctcagacaggttcggttcgactcgactcattttcagc 23207036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 5418101 - 5418047
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    ||||||||||||||||| |||||||| ||||   |||||||||||||||||||||    
T  5418101 ttatcgagtcaagccgaactcagacaagttcgactcgactcgactcatttccagc 5418047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 30740790 - 30740736
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||||||   |||||||||| |||| |||||||||||||||||||||||    
T  30740790 ttatcgagtcaagtaaagctcagacaagttcggttcgactcgactcatttccagc 30740736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 9413346 - 9413400
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| || |||||||||||| ||||||||||||||||||||||||||||    
T  9413346 ttatcgagtcgagtcgagctcagacaagttcagttcgactcgactcatttccagc 9413400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 80
Target Start/End: Original strand, 22930940 - 22930979
Alignment:
Q  41 cgagctcagacaggttcagttcgactcgactcatttccag 80  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  22930940 cgagttcagacaggttcggttcgactcgactcatttccag 22930979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 27189639 - 27189689
Alignment:
Q  31 cgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||| || |||||||||||| ||||  ||||||||||||||||||||||    
T  27189639 cgagtcgagtcgagctcagacaagttcgattcgactcgactcatttccagc 27189689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 11161136 - 11161087
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcattt 76  Q
    |||||||||  |||||||||||| ||||| | ||||||||||||||||||    
T  11161136 ttatcgagtggagccgagctcaggcaggtccggttcgactcgactcattt 11161087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 33280724 - 33280772
Alignment:
Q  31 cgagtcaagccgagctcagacaggttcagttcgactcgactcatttcca 79  Q
    |||||| || ||| |||||||||||||  ||||||||||||||||||||    
T  33280724 cgagtcgagtcgaactcagacaggttcgattcgactcgactcatttcca 33280772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 34515599 - 34515559
Alignment:
Q  41 cgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| ||||||  ||||||||||||||||||||||    
T  34515599 cgagctcagataggttcgattcgactcgactcatttccagc 34515559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 18768 - 18714
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| ||||||||||| |||| ||| |||||||||||||||||||||||    
T  18768 ttatcgagtcgagccgagctcaaacagattcggttcgactcgactcatttccagc 18714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 24470596 - 24470650
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||  |||||||||||| ||||||| |||||||||||||||||||||||    
T  24470596 ttatcgagttgagccgagctcaggcaggttcggttcgactcgactcatttccagc 24470650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 44595873 - 44595833
Alignment:
Q  41 cgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  44595873 cgagctcagacaggttcggttcgactcgactcatttccagc 44595833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 37441911 - 37441954
Alignment:
Q  38 agccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||||| ||||||| |||||||||||||||||||||||    
T  37441911 agccgagctcaggcaggttcggttcgactcgactcatttccagc 37441954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 29678186 - 29678240
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| || | |||||||||||||||  ||||||||||||||||||||||    
T  29678186 ttatcgagtcgagtcaagctcagacaggttcgattcgactcgactcatttccagc 29678240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 32179391 - 32179337
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    ||||||| || |||||||||||| || |||| |||||||||||||||||||||||    
T  32179391 ttatcgaatcgagccgagctcaggcaagttcggttcgactcgactcatttccagc 32179337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 36418578 - 36418524
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| |||||||||||| ||| |||  ||||||||||||||||||||||    
T  36418578 ttatcgagtcgagccgagctcaggcagattcgattcgactcgactcatttccagc 36418524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 47603491 - 47603545
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||  |||||| ||||| ||||||| |||||||||||||||||||||||    
T  47603491 ttatcgagttgagccgaactcaggcaggttcggttcgactcgactcatttccagc 47603545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 14579117 - 14579167
Alignment:
Q  31 cgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||| || |||||||| ||||||||  ||||||||||||||||||||||    
T  14579117 cgagtcgagtcgagctcatacaggttcgattcgactcgactcatttccagc 14579167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 23916185 - 23916135
Alignment:
Q  31 cgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||| || |||||| ||||||||||  ||||||||||||||||||||||    
T  23916185 cgagtcgagtcgagcttagacaggttcgattcgactcgactcatttccagc 23916135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 28005793 - 28005739
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| || |||||||||| ||||||   |||||||||||||||||||||    
T  28005793 ttatcgagtcgagtcgagctcagagaggttcgactcgactcgactcatttccagc 28005739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 35309066 - 35309012
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| | ||||||||||  |||||| ||||||||| |||||||||||||    
T  35309066 ttatcgagtcgaaccgagctcaggtaggttcggttcgactcaactcatttccagc 35309012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 38061701 - 38061755
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| |  |||||||||||||||||   |||||||||||||||||||||    
T  38061701 ttatcgagtcgaatcgagctcagacaggttcgactcgactcgactcatttccagc 38061755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 5205206 - 5205246
Alignment:
Q  41 cgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||||||||||   |||||||||||||||||||||    
T  5205206 cgagctcagacaggttcgactcgactcgactcatttccagc 5205246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 24575358 - 24575306
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttcca 79  Q
    ||||||| ||||  |||||||||||||||||   |||||||||||||||||||    
T  24575358 ttatcgattcaaatcgagctcagacaggttcgactcgactcgactcatttcca 24575306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 45654449 - 45654501
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttcca 79  Q
    |||||||||| || ||||||||| |||||||   |||||||||||||||||||    
T  45654449 ttatcgagtcgagtcgagctcaggcaggttcgactcgactcgactcatttcca 45654501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 6475 - 6529
Alignment:
Q  27 ttatcgagtcaagccgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||| || ||||||||| |||||||| ||||||||||||||||| ||||    
T  6475 ttatcgagtcgagtcgagctcaggcaggttcaattcgactcgactcattttcagc 6529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 16536 - 16496
Alignment:
Q  41 cgagctcagacaggttcagttcgactcgactcatttccagc 81  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  16536 cgagctcagacaggttcgattcgactcgactcatttccagc 16496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University