View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14975_high_33 (Length: 245)
Name: NF14975_high_33
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14975_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 44543889 - 44544131
Alignment:
| Q |
1 |
aaagcaccaagcaaggtagcaaagttggtactaccactgaagatattgatgatgtttgcagctgtaatgtttttcaggttgaatacagttgtaagataga |
100 |
Q |
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| T |
44543889 |
aaagcaccaagcaaggtagcaaagttggtactgccactgaagatattgatgatgtttgcagctgtaatgtttttcaggttgaatacagttgtaagataga |
44543988 |
T |
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| Q |
101 |
ccaacaagtttgctaatgttccaatagctcctaatttttcaaaagtttcatttcctgttcataaaaaatttcaag----cataattagactaaaaaatat |
196 |
Q |
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| T |
44543989 |
ccaacaagtttgctaatgttccaatggctcctaatttttcaaaagtttcatttcctgttcataaaaattttcaagtataaataattagactaaaaaatat |
44544088 |
T |
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| Q |
197 |
agagaaaaattgatagaaagagtgtgtacattaattacctatg |
239 |
Q |
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| T |
44544089 |
agagaaaaattgatagaaagagtgtgtacattaattacctatg |
44544131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 44565504 - 44565585
Alignment:
| Q |
76 |
aggttgaatacagttgtaagatagaccaacaagtttgctaatgttccaatagctcctaatttttcaaaagtttcatttcctg |
157 |
Q |
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| T |
44565504 |
aggttgaagactgatgtaagatagaccaagaggtttgctaaggtaccaatggctcctagcttctcaaatgtttcatttcctg |
44565585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 44554623 - 44554708
Alignment:
| Q |
19 |
gcaaagttggtactaccactgaagatattgatgatgtttgcagctgtaatgtttttcaggttgaatacagttgtaagatagaccaa |
104 |
Q |
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| T |
44554623 |
gcaaagttggtacttccgttaaagatgttgataatatttgtagctgcgatgttttccaagttgaataccgtagtaagatagaccaa |
44554708 |
T |
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