View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14975_high_5 (Length: 509)
Name: NF14975_high_5
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14975_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 376
Target Start/End: Original strand, 43807944 - 43808310
Alignment:
| Q |
10 |
agtagcataggcagtggtgttgttatcaaccaccggagcaccaatcctcatcctcacaccttcaaaaatattgcgagcatcaatgaaacgcttccacatc |
109 |
Q |
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|||| ||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43807944 |
agtaacatagacagtggtgttgttatcaaccaccagagcaccaatgctcatcctcacaccttcaaaaatattgcgagcatcaatgaaacgctttcacatc |
43808043 |
T |
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| Q |
110 |
ccaccaatcttgcaatactcatacaaagtcgacccaaacatcaaaacacagtcccaagcatttccacagtcatcccccagtttcacggttgcggcagccc |
209 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43808044 |
ccaccaatcttgcaatactcatacagagtcgacccaaacatcaaaacacagtcccaagcatttccacagtcatcccccagtttcacggttgcggcagccc |
43808143 |
T |
|
| Q |
210 |
tgtcaataatctcctcacatcgtccttcatatttcagcatatatgaaaagcaaaaatcaaagcaaaacaatgtgcataatggcaccctaaaacaaatcag |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43808144 |
tgtcaataatctcctcacatcgtccttcatatttcagcatatatgaaaagcaaaaatcaaagcaaaacaatgtgcataatggcaccctaaaacaaatcag |
43808243 |
T |
|
| Q |
310 |
aatggaaaatcagcaataagaagaaatatagcagaaccaaataacgccaaccatgagcatgaataac |
376 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43808244 |
aatgaaaaatcagcaataagaagaaatatagcagaaccaaataacgccaaccatgagcatgaataac |
43808310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 417 - 491
Target Start/End: Original strand, 43808370 - 43808444
Alignment:
| Q |
417 |
aatgtacgttctgtatttcattcttagcttgttgagaacagtatcaaactcgctctcagggttgttgattaaagg |
491 |
Q |
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| T |
43808370 |
aatgtacgttctgtatttcattcttagcttgttgagaacagtatcaaactcgctctcagggttgttgattaaagg |
43808444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 38507633 - 38507406
Alignment:
| Q |
22 |
agtggtgttgttatcaaccaccggagcaccaatcctcatcctcacaccttcaaaaatattgcgagcatcaatgaaacgcttccacatcccaccaatcttg |
121 |
Q |
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||||| |||||| |||||||| | || | |||| | ||||||||||||||||||| ||| ||||||||| ||||||||||| |||||||||||||| |
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| T |
38507633 |
agtggagttgtttccaaccacctgggcgcaaatcataatcctcacaccttcaaaaaatttgtgagcatcaacaaaacgcttccagctcccaccaatcttg |
38507534 |
T |
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| Q |
122 |
caatactcatacaaagtcgacccaaacatcaaaacacagtcccaagcatttccacagtcatcccccagtttcacggttgcggcagccctgtcaataatct |
221 |
Q |
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| T |
38507533 |
cagtgctcatacggagtcaatccaaacatcaaaacacagtcccactcattttcatagtcatccaccagtttcacggttgtggcagccatgttaataacct |
38507434 |
T |
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| Q |
222 |
cctcacatcgtccttcatatttcagcat |
249 |
Q |
| |
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|| | |||||||||||||| ||||| |
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| T |
38507433 |
gctgaacgcgtccttcatatttgagcat |
38507406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 48539613 - 48539555
Alignment:
| Q |
136 |
agtcgacccaaacatcaaaacacagtcccaagcatttccacagtcatcccccagtttca |
194 |
Q |
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|||||| ||||| |||||||||||||||||| ||||||||| |||||| ||| ||||| |
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| T |
48539613 |
agtcgagccaaagatcaaaacacagtcccaacaatttccacaatcatccaccattttca |
48539555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 417 - 491
Target Start/End: Original strand, 37148012 - 37148086
Alignment:
| Q |
417 |
aatgtacgttctgtatttcattcttagcttgttgagaacagtatcaaactcgctctcagggttgttgattaaagg |
491 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37148012 |
aatgtacgttctgtatttcattcttctcttgttgagaacagtatcaaactcgctctcatggttgttgattaaagg |
37148086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 276 - 376
Target Start/End: Original strand, 37147832 - 37147935
Alignment:
| Q |
276 |
acaatgtgcataatggcaccctaaaacaaatca---gaatggaaaatcagcaataagaagaaatatagcagaaccaaataacgccaaccatgagcatgaa |
372 |
Q |
| |
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|||||||||||||||||||||||||| ||| | |||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37147832 |
acaatgtgcataatggcaccctaaaaaaaaaaaagagaataaaaaatcagaaataagaagaaatatagcagaaccaaataacatgaaccatgagcatgaa |
37147931 |
T |
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| Q |
373 |
taac |
376 |
Q |
| |
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|||| |
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| T |
37147932 |
taac |
37147935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 13066199 - 13066257
Alignment:
| Q |
136 |
agtcgacccaaacatcaaaacacagtcccaagcatttccacagtcatcccccagtttca |
194 |
Q |
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|||||| ||||| |||||||||||||||||| ||||||||| |||||| ||| ||||| |
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| T |
13066199 |
agtcgagccaaagatcaaaacacagtcccaacaatttccacaatcatccaccattttca |
13066257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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