View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14975_high_6 (Length: 483)
Name: NF14975_high_6
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14975_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 13 - 467
Target Start/End: Original strand, 28833552 - 28834006
Alignment:
| Q |
13 |
aatataacacgaccatttgtttatgtagctcggctaattgtgtatatctctgtgatagtatctgcgatagtatatcagctatagtttcgtatattatttg |
112 |
Q |
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| T |
28833552 |
aatataacacgaccatttgtttatgtagctgggctaattgtgtatatctctgtgatagtatctgcgatagtatatcagctatagtttcgtatattatttg |
28833651 |
T |
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| Q |
113 |
agtgaattaggatttacggcattacaagccatatatatagaattattgtccatatatgtgagttatactcaacaaattccataaatctttgagttagtgt |
212 |
Q |
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| T |
28833652 |
agtgaattaggatttacggcattacaagccatatatatagaattattgtccatatatgtgagttatactcaacaaattccataaatctttgagttagtgt |
28833751 |
T |
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| Q |
213 |
caactgagatattgaacactttgaaaatgtgaatagattcgagactgaaatattctacaatcaaacaacacaacctgggaatggtatattatgtgggaac |
312 |
Q |
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| T |
28833752 |
caactgagatattgaacactttgaaaatgtgaatagattcgagactgaaatattctacaatcaaacaacacaacctgggaatggtatgttatgtggaaac |
28833851 |
T |
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| Q |
313 |
aaaactgcaaatgaaggcactgcatttggaacaattggacataaagtgctgatggatatccaattagcaacacctaaaattaaaggnnnnnnngcagcta |
412 |
Q |
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| T |
28833852 |
aagactgcaaaagaaggcgctgcatttggaacaattggacaaaaagtgctaatggatatccaattagcaacacctaaaattaaaggtttttttgcagcta |
28833951 |
T |
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| Q |
413 |
ctaagacacacgtgacacctggtggaaatatttcaatttatgccattgcacagtg |
467 |
Q |
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| T |
28833952 |
ctaagacacaagtgacacctggtggaaatagttcaatttatgccattgcacagtg |
28834006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 229 - 467
Target Start/End: Original strand, 28824889 - 28825127
Alignment:
| Q |
229 |
cactttgaaaatgtgaatagattcgagactgaaatattctacaatcaaacaacacaacctgggaatggtatattatgtgggaacaaaactgcaaatgaag |
328 |
Q |
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| T |
28824889 |
cactttgaaaatgtgataaggtacgagagtgaaagattctacgatcaaacaactcaacaagggaatggtgtaatatgtgggaacaaaactgcaaaagaag |
28824988 |
T |
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| Q |
329 |
gcactgcatttggaacaattggacataaagtgctgatggatatccaattagcaacacctaaaattaaaggnnnnnnngcagctactaagacacacgtgac |
428 |
Q |
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| T |
28824989 |
gcactgcatttggaacaattggacacaaagtgctaatggatatccaattagcaacacctaaaatcaaaggtttttttgcagctaccaagacacaggtgac |
28825088 |
T |
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| Q |
429 |
acctggtggaaatatttcaatttatgccattgcacagtg |
467 |
Q |
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| T |
28825089 |
acctggtggaaatagttcagtttatgccgttgcacagtg |
28825127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 5948945 - 5949000
Alignment:
| Q |
97 |
tttcgtatattatttgagtgaattaggatttacggcattacaagccatatatatag |
152 |
Q |
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| T |
5948945 |
tttcgtatattacttgagtgaattagtgtttacagtgttacaagccatatatatag |
5949000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 28820798 - 28820725
Alignment:
| Q |
91 |
ctatagtttcgtatattatttgagtgaattaggatttacggcattacaagccatatatatagaattattgtcca |
164 |
Q |
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| T |
28820798 |
ctatagttccatatattacttgagtgaattagagtttacagtgttacaaaccatatatatagtattatggtcca |
28820725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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