View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14975_high_8 (Length: 453)
Name: NF14975_high_8
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14975_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 11712533 - 11712117
Alignment:
| Q |
1 |
ttttacaaaattgaaagtttacataattaaagagttcaaattaaactcttccattggtgagaagattattatcctgtagttctacctaatacactgtaca |
100 |
Q |
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||||||| |||||||||| |||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11712533 |
ttttacacaattgaaagtctacataattacagagttcaaattcaactcttccattgatgagaagattattatcctgtagttctacctaatgcactgtaca |
11712434 |
T |
|
| Q |
101 |
tacatttactacatttctcatgtttgtggtttttctcaagttctgaaatgtcgtaaaataactcctgtttagaattgcaatcaattcattggagtaaagt |
200 |
Q |
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| T |
11712433 |
tacatttactacatttctca------------------agttctgaaatgtcgcaaaataactcctgtttagaattgcaatcaattcattggagtaaagt |
11712352 |
T |
|
| Q |
201 |
tccatgcattacatttacaaactaaaatgaatagnnnnnnntcaacaagtacagtcttctatttagcaagaaaaggatacttggactcaacatagttttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11712351 |
tccatgcattacatttacaaactaaaatgaatagaaaaaaatcaacaagtacagtcttctatttagcaagaaaaggatacttggactcaacatagttttc |
11712252 |
T |
|
| Q |
301 |
ttcgtcccataagaatgatccaaaagcaacagattccaaaacaagcatagtcaagcctgagaaggtaagtgaaagaacttcatcattggtagtttcaatc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11712251 |
ttcgtcccataagaatgatccaaaagcaacagattccaaaacaagcatagtcaagcctgagaaggtaagcgaaagaacttcatcattggtagtttcaatc |
11712152 |
T |
|
| Q |
401 |
gaaccatcgccagagaggcggatatcaggccttcc |
435 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
11712151 |
gaaccatcgccagagaggcggatatcaggccttcc |
11712117 |
T |
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