View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14975_high_9 (Length: 414)
Name: NF14975_high_9
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14975_high_9 |
 | |
|
| [»] scaffold0009 (2 HSPs) |
| | |
|
| [»] scaffold0031 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 413
Target Start/End: Original strand, 47649931 - 47650330
Alignment:
| Q |
12 |
agaagcatcatttatccattctccattgctgtttgtgtgagtcattctccataaatccttatagttaggctcctttttggtttcgggacctctctaaaag |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| |
|
|
| T |
47649931 |
agaagcatcatttatccat-ctccattgctgtttgtgcgagtcattctccataaatccttatagttgggctcctttttggtttcaggatctctctaaaag |
47650029 |
T |
|
| Q |
112 |
caaattttcatcatcgcaaaatataaatacatataagttatcaagtcaatgacaaatatactagaaaaaagggaatttgatattatatattttaccgcgt |
211 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| | | |||||| |||||||||| ||||||||||||| | |
|
|
| T |
47650030 |
caaattttcatcatcacaaaatataaatacatgtaagttatcaagtcaatgacaaatatacca-acaaaaggagatttgatattttatattttaccgcat |
47650128 |
T |
|
| Q |
212 |
catagctaacaacttgaaatgacttccttccacatctatgattaataacttgtttagatttatttgatttgttcctgttactaatttcttttaaatcaca |
311 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||| | | |
|
|
| T |
47650129 |
catagctaacggcttgaaatgacttccttccacatctatgatttataacttgtttagatttatttgatttgttcctgtaactaatttcctgtaaataata |
47650228 |
T |
|
| Q |
312 |
caagtataaatatagtagatgtttacgtatagaattaaattacccatatttatatagtaaatataatacaaacatacattgaattcaagacttgaagaat |
411 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||| ||||||||| |||||||| ||| |
|
|
| T |
47650229 |
caagtagaaatatagtatatgtttacgtataaaattaaattacctatatttatatagtaaatctaatacaaacataccttgaattcaggacttgaaaaat |
47650328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 170893 - 170660
Alignment:
| Q |
12 |
agaagcatcatttatccattctccattgctgtttgtgtgagtcattctccataaatccttatagttaggctcctttttggtttcgggacctctctaaaag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
170893 |
agaagcatcatttatccattctccattgctgtttgtgtgagtcattctccataaatccttatagttagcctcctttttggtttcgggatctctctaaaag |
170794 |
T |
|
| Q |
112 |
caaattttcatcatcgcaaaatataaatacatataagttatcaagtcaatgacaaatatactagaaaaaagggaatttgatattatatattttaccgcgt |
211 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
170793 |
caaattttcatcattgcaaaatataaatacatataagttatcaagtcaatgacaaatatactaggaaaaaggagatttgatattatatattttaccgcgt |
170694 |
T |
|
| Q |
212 |
catagctaacaacttgaaatgacttccttccaca |
245 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
170693 |
catagctaacagcttgaaatgacttccttccaca |
170660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 315 - 413
Target Start/End: Complemental strand, 170645 - 170547
Alignment:
| Q |
315 |
gtataaatatagtagatgtttacgtatagaattaaattacccatatttatatagtaaatataatacaaacatacattgaattcaagacttgaagaataa |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
170645 |
gtataaatatagtagatgtttacgtatagaattaaattgcctatatttatatagtaaatataatacaaacatacattgaattcaggacttgaaaaataa |
170547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 12 - 195
Target Start/End: Original strand, 92089 - 92273
Alignment:
| Q |
12 |
agaagcatcatttatccattctccattgctgtttgtgtgagtcattctccataaatccttatagttaggctcctttttggtttcgggacctctctaaaag |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| ||||||||| ||||| || ||||||||||| |
|
|
| T |
92089 |
agaagcatcatttatccattctccgttgttgtttatgtgagtcattctccataaatccttatagttgtgctccttttcagtttcaagatctctctaaaag |
92188 |
T |
|
| Q |
112 |
caaattttcatcatcgcaaaatataaatacatataagttatcaagtcaatgacaaatatactagaaaaaaggga-atttgatatt |
195 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| |||||||||| |
|
|
| T |
92189 |
caaattttcatcgtcacaaaatataaatacatataagttatcaagtcaatgataaatataccaaaaaaaagggagatttgatatt |
92273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 101 - 297
Target Start/End: Original strand, 30754154 - 30754353
Alignment:
| Q |
101 |
ctctctaaaagcaaattttcatcatcgcaaaatataaatacatataagttatcaagtcaatgacaaatatactagaaaaaaggga-atttgatattat-- |
197 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||| || |||||||||||||||||||||| |||||||| | ||||||| || |||| ||||| | |
|
|
| T |
30754154 |
ctctctaaaagcatattttcatcatcacaaaatataattagatataagttatcaagtcaatgataaatatacca-aaaaaagagagattttatatttttt |
30754252 |
T |
|
| Q |
198 |
-atattttaccgcgtcatagctaacaacttgaaatgacttccttccacatctatgattaataacttgtttagatttatttgatttgttcctgttactaat |
296 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| | |||||||||| |||| |||||||||||||||||| |||||| |||||||||| |||||||| |
|
|
| T |
30754253 |
tatattataccgcgtcatagctaacaacttgaaataaattccttccacgtctacaattaataacttgtttagacttatttaatttgttccttttactaat |
30754352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 37332670 - 37332722
Alignment:
| Q |
14 |
aagcatcatttatccattctccattgctgtttgtgtgagtcattctccataaat |
67 |
Q |
| |
|
|||||||||||||||| ||||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
37332670 |
aagcatcatttatccactctcccttg-tatttgtgtgagtcattctccataaat |
37332722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 328
Target Start/End: Original strand, 37332844 - 37332924
Alignment:
| Q |
248 |
tatgattaataacttgtttagatttatttgatttgttcctgttactaatttcttttaaatcacacaagtataaatatagta |
328 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| | |||||| | | ||||| | |||| || |||||||||| |
|
|
| T |
37332844 |
tatgattaataacttgttttgctttatttgatttgttcctttcgctaattgcctgtaaataatacaaatagaaatatagta |
37332924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University