View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14975_low_1 (Length: 686)

Name: NF14975_low_1
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14975_low_1
NF14975_low_1
[»] chr8 (24 HSPs)
chr8 (172-671)||(27756538-27757027)
chr8 (30-170)||(27756301-27756441)
chr8 (574-612)||(2116600-2116638)
chr8 (574-612)||(3547247-3547285)
chr8 (624-670)||(3547310-3547356)
chr8 (624-678)||(30266010-30266064)
chr8 (576-612)||(12845665-12845701)
chr8 (574-647)||(33449464-33449539)
chr8 (578-612)||(13637206-13637240)
chr8 (578-612)||(13737619-13737653)
chr8 (578-612)||(19438981-19439015)
chr8 (578-612)||(19575130-19575164)
chr8 (578-666)||(25563105-25563190)
chr8 (578-612)||(30266087-30266121)
chr8 (574-612)||(33968852-33968890)
chr8 (624-678)||(34649621-34649675)
chr8 (624-670)||(38783675-38783721)
chr8 (578-612)||(43325467-43325501)
chr8 (574-612)||(44061198-44061236)
chr8 (624-672)||(18754031-18754080)
chr8 (579-612)||(42570715-42570748)
chr8 (579-612)||(42957819-42957852)
chr8 (641-678)||(43638421-43638458)
chr8 (578-610)||(25827043-25827075)
[»] chr2 (11 HSPs)
chr2 (225-359)||(24167465-24167599)
chr2 (624-678)||(3462667-3462721)
chr2 (578-670)||(42578504-42578605)
chr2 (574-678)||(27337197-27337312)
chr2 (574-612)||(3207220-3207258)
chr2 (578-612)||(38376523-38376557)
chr2 (578-612)||(41322055-41322089)
chr2 (576-612)||(10913466-10913502)
chr2 (581-612)||(725169-725200)
chr2 (578-612)||(3462610-3462644)
chr2 (574-612)||(37472192-37472230)
[»] chr3 (19 HSPs)
chr3 (225-359)||(46225739-46225874)
chr3 (91-170)||(46225904-46225983)
chr3 (574-613)||(29109248-29109287)
chr3 (574-612)||(27516315-27516353)
chr3 (578-612)||(44247718-44247752)
chr3 (579-612)||(31880690-31880723)
chr3 (581-629)||(28874321-28874369)
chr3 (574-606)||(52796834-52796866)
chr3 (577-612)||(36040340-36040375)
chr3 (574-678)||(50001874-50001989)
chr3 (574-612)||(4987004-4987042)
chr3 (578-612)||(18371086-18371120)
chr3 (624-678)||(45339406-45339460)
chr3 (578-612)||(46443981-46444015)
chr3 (578-612)||(52099832-52099866)
chr3 (641-678)||(24088033-24088070)
chr3 (575-612)||(37515996-37516033)
chr3 (624-677)||(39776815-39776868)
chr3 (629-678)||(49952175-49952224)
[»] chr4 (20 HSPs)
chr4 (574-678)||(470107-470207)
chr4 (624-678)||(52399284-52399338)
chr4 (575-612)||(25052340-25052377)
chr4 (576-612)||(34411337-34411373)
chr4 (578-662)||(11671846-11671938)
chr4 (578-612)||(34413061-34413095)
chr4 (574-612)||(56051171-56051209)
chr4 (579-612)||(32208273-32208306)
chr4 (574-613)||(5655992-5656031)
chr4 (574-612)||(22422749-22422787)
chr4 (624-678)||(39121203-39121257)
chr4 (578-612)||(40547715-40547749)
chr4 (578-612)||(47085886-47085920)
chr4 (624-670)||(49629096-49629142)
chr4 (582-612)||(52470229-52470259)
chr4 (578-612)||(53062086-53062120)
chr4 (629-670)||(6447091-6447132)
chr4 (579-612)||(50381877-50381910)
chr4 (579-612)||(52399361-52399394)
chr4 (625-677)||(23127340-23127392)
[»] chr7 (21 HSPs)
chr7 (574-678)||(3563048-3563152)
chr7 (574-612)||(41203982-41204020)
chr7 (574-612)||(11315525-11315563)
chr7 (578-612)||(46290438-46290472)
chr7 (579-612)||(10048275-10048308)
chr7 (579-612)||(41816549-41816582)
chr7 (578-610)||(3633008-3633040)
chr7 (574-606)||(45657784-45657816)
chr7 (578-613)||(20383924-20383959)
chr7 (581-612)||(33989794-33989825)
chr7 (623-678)||(34996757-34996812)
chr7 (577-612)||(48402520-48402555)
chr7 (578-612)||(18534202-18534236)
chr7 (578-612)||(27542800-27542834)
chr7 (578-612)||(34996834-34996868)
chr7 (578-612)||(37031220-37031254)
chr7 (574-612)||(37545401-37545439)
chr7 (578-612)||(40091022-40091056)
chr7 (624-677)||(18791140-18791193)
chr7 (579-612)||(33614099-33614132)
chr7 (584-612)||(49024170-49024198)
[»] chr1 (19 HSPs)
chr1 (579-677)||(43361442-43361540)
chr1 (574-678)||(43360283-43360398)
chr1 (574-612)||(23202000-23202038)
chr1 (576-612)||(10617325-10617361)
chr1 (576-612)||(29733292-29733328)
chr1 (629-672)||(29232558-29232601)
chr1 (574-612)||(2167795-2167833)
chr1 (574-612)||(26940425-26940463)
chr1 (578-612)||(38674186-38674220)
chr1 (578-612)||(11427558-11427592)
chr1 (574-604)||(13703276-13703306)
chr1 (624-678)||(26940348-26940402)
chr1 (574-612)||(30724600-30724638)
chr1 (578-612)||(46085538-46085572)
chr1 (629-678)||(5187027-5187076)
chr1 (579-612)||(30613034-30613067)
chr1 (579-612)||(30720925-30720958)
chr1 (574-603)||(45707972-45708001)
chr1 (580-612)||(34918452-34918484)
[»] scaffold0385 (1 HSPs)
scaffold0385 (575-612)||(11898-11935)
[»] chr5 (11 HSPs)
chr5 (580-670)||(16363920-16364006)
chr5 (574-612)||(11447316-11447354)
chr5 (629-678)||(13760971-13761020)
chr5 (578-612)||(1157069-1157103)
chr5 (578-612)||(8223829-8223863)
chr5 (574-632)||(26647808-26647866)
chr5 (574-632)||(26919393-26919451)
chr5 (574-612)||(38503524-38503562)
chr5 (579-612)||(9780179-9780212)
chr5 (629-678)||(18515710-18515759)
chr5 (624-672)||(1156998-1157046)
[»] scaffold0380 (1 HSPs)
scaffold0380 (574-612)||(58-96)
[»] scaffold0072 (1 HSPs)
scaffold0072 (574-612)||(46525-46563)
[»] scaffold0069 (1 HSPs)
scaffold0069 (574-612)||(35972-36010)
[»] chr6 (7 HSPs)
chr6 (578-612)||(9244764-9244798)
chr6 (574-606)||(251810-251842)
chr6 (574-612)||(3711439-3711477)
chr6 (624-678)||(10365013-10365067)
chr6 (578-612)||(13887248-13887282)
chr6 (582-612)||(32818743-32818773)
chr6 (574-611)||(7341308-7341345)
[»] scaffold0287 (1 HSPs)
scaffold0287 (578-610)||(13045-13077)
[»] scaffold0031 (1 HSPs)
scaffold0031 (578-612)||(1501-1535)
[»] scaffold0459 (1 HSPs)
scaffold0459 (574-611)||(12351-12388)
[»] scaffold0366 (2 HSPs)
scaffold0366 (574-611)||(9992-10029)
scaffold0366 (574-611)||(13658-13695)
[»] scaffold0361 (1 HSPs)
scaffold0361 (629-677)||(13888-13936)


Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 172 - 671
Target Start/End: Original strand, 27756538 - 27757027
Alignment:
Q  172 atattgtattctactttcctctgataacatcatttcttacttgtttcagaaattggaagactgcaatagtttcatctagtccacttatcttcttaggatt 271  Q
    ||||||||||||| |||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27756538 atattgtattctagtttcctcttataacatcatttcttgcttgcttcagaaattggaagactgcaatagtttcatctagtccacttatcttcttaggatt 27756637  T
Q  272 ttttcgacttgttacaacaactggtgtggattatcaggtgggattatactcattgagattcttagaaatttgtgtcaacaaacgttttgacatgcatcta 371  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||     
T  27756638 ttttcgacttgttacaacaactggtgtggattatcaggtaggattatactcattgagattcttagaaatttgtgtcaacaaacatttcgacatgcatct- 27756736  T
Q  372 ctaatactgcatcgtattaaactttaacaa-tataatcgcacatgtgtttttgaaatttccatcaactctgtgtataatcacacatgttaaatgatgtag 470  Q
                  |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||| ||||| |||||||||||||||||||    
T  27756737 --------------tattaaactttaacaagtataatcgcacatgtgtttttgaaatttctatcaactctatgtttaatcccacatgttaaatgatgtag 27756822  T
Q  471 -tttccaagactataataatctgacccctatggtttgttttcctatcgactctgatgccatgcatgattggtttagtggggc-annnnnnnngtttgcaa 568  Q
     |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| | || | ||||||          ||||||||    
T  27756823 ttttccaagactataataatctgacccctatggtttgttttcctatcaactctgatgccattcatgatggtttgattggggcttttttttttgtttgcaa 27756922  T
Q  569 aaacttttggaagagaagttgtgaagagagaaataggta--agagaatgtggaaagagtgaaaaatagaataggtttgatgaattgtttggtataagaga 666  Q
    ||||||||| |||||||||||||||||||||||||||||  ||||||| || ||||||||||||||||| ||| |||||||||||||||||||||||| |    
T  27756923 aaacttttgaaagagaagttgtgaagagagaaataggtaagagagaatttgaaaagagtgaaaaatagagtagatttgatgaattgtttggtataagata 27757022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 30 - 170
Target Start/End: Original strand, 27756301 - 27756441
Alignment:
Q  30 tatgtttactgaaatagaataatcatgtttacttagatatagaaacaccttgtttgttgagtttgatagttttctaatggtaatactttagggaattttc 129  Q
    |||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27756301 tatgtttactgaaatagaataatcacatttacttagatgtagaaacaccttgtttgttgagtttgatagttttctaatggtaatactttggggaattttc 27756400  T
Q  130 aactagctcatacaataggcaaagaagcatcattaacatga 170  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  27756401 aactagctcatacaataggcaaagaagcattattaacatga 27756441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 574 - 612
Target Start/End: Complemental strand, 2116638 - 2116600
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  2116638 tttggaagagaagttgtgaagagagaaataggtgagaga 2116600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 574 - 612
Target Start/End: Original strand, 3547247 - 3547285
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  3547247 tttggaagagaagttgtgaagagagaaatatgtaagaga 3547285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 624 - 670
Target Start/End: Original strand, 3547310 - 3547356
Alignment:
Q  624 gtgaaaaatagaataggtttgatgaattgtttggtataagagaaaga 670  Q
    |||||||||| | ||||||||||| ||||||||||||||||||||||    
T  3547310 gtgaaaaatatagtaggtttgatgtattgtttggtataagagaaaga 3547356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 624 - 678
Target Start/End: Complemental strand, 30266064 - 30266010
Alignment:
Q  624 gtgaaaaatagaataggtttgatgaattgtttggtataagagaaagagaagagaa 678  Q
    |||| ||||||||||  ||||||| | ||||||||||||||||||||||||||||    
T  30266064 gtgagaaatagaataaatttgatgtagtgtttggtataagagaaagagaagagaa 30266010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 576 - 612
Target Start/End: Complemental strand, 12845701 - 12845665
Alignment:
Q  576 tggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||||| |||||    
T  12845701 tggaagagaagttgtgaagagagaaataggtgagaga 12845665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 647
Target Start/End: Original strand, 33449464 - 33449539
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggta--agagaatgtggaaagagtgaaaaatagaataggtttgatg 647  Q
    ||||||||| ||||| ||||||||||||||||||  ||||| | ||||||||| || ||||||| ||| |||||||    
T  33449464 tttggaagataagttatgaagagagaaataggtaagagagagtatggaaagagagagaaatagagtagatttgatg 33449539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Complemental strand, 13637240 - 13637206
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||| |||||    
T  13637240 gaagagaagttgtgaagagagaaataggtgagaga 13637206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Complemental strand, 13737653 - 13737619
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||| |||||    
T  13737653 gaagagaagttgtgaagagagaaataggtgagaga 13737619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Original strand, 19438981 - 19439015
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||| |||||    
T  19438981 gaagagaagttgtgaagagagaaataggtgagaga 19439015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Original strand, 19575130 - 19575164
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||| |||||    
T  19575130 gaagagaagttgtgaagagagaaataggtgagaga 19575164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 666
Target Start/End: Original strand, 25563105 - 25563190
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagagaatgtggaaagagtgaaaaatagaataggtttgatgaattgtttggtataagaga 666  Q
    ||||||||||||||||||||||||||| ||||| |   || |||| |||||||||| ||||| ||| ||   |||||| ||||||||||    
T  25563105 gaagagaagttgtgaagagagaaatagataagaaa---tgaaaagggtgaaaaatataatagattttattggttgtttagtataagaga 25563190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Complemental strand, 30266121 - 30266087
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||| ||||||||    
T  30266121 gaagagaagttgtgaagagagaaatatgtaagaga 30266087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 612
Target Start/End: Original strand, 33968852 - 33968890
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  33968852 tttggaagagaagttgagaagagagaattaggtaagaga 33968890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 624 - 678
Target Start/End: Complemental strand, 34649675 - 34649621
Alignment:
Q  624 gtgaaaaatagaataggtttgatgaattgtttggtataagagaaagagaagagaa 678  Q
    |||| ||||||| ||| ||||||| ||||||||||| |||||||||| |||||||    
T  34649675 gtgagaaatagagtagatttgatgtattgtttggtagaagagaaagataagagaa 34649621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 624 - 670
Target Start/End: Complemental strand, 38783721 - 38783675
Alignment:
Q  624 gtgaaaaatagaataggtttgatgaattgtttggtataagagaaaga 670  Q
    |||| ||||| | ||| ||||||||||||||||||||||||||||||    
T  38783721 gtgagaaatatagtagatttgatgaattgtttggtataagagaaaga 38783675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Original strand, 43325467 - 43325501
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||| |||||||||||    
T  43325467 gaagagaagttgtgaagagagaagtaggtaagaga 43325501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 612
Target Start/End: Original strand, 44061198 - 44061236
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  44061198 tttggaagagaagttgtgaagagagaaagaggtgagaga 44061236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 624 - 672
Target Start/End: Original strand, 18754031 - 18754080
Alignment:
Q  624 gtgaaaaatagaataggtttgatgaattgtttggtat-aagagaaagaga 672  Q
    |||||||||| ||||| ||||||| |||||||||||| ||||||||||||    
T  18754031 gtgaaaaatataatagatttgatgtattgtttggtatcaagagaaagaga 18754080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 612
Target Start/End: Original strand, 42570715 - 42570748
Alignment:
Q  579 aagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||||| |||||    
T  42570715 aagagaagttgtgaagagagaaataggtgagaga 42570748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 612
Target Start/End: Original strand, 42957819 - 42957852
Alignment:
Q  579 aagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||||| |||||    
T  42957819 aagagaagttgtgaagagagaaataggtgagaga 42957852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 641 - 678
Target Start/End: Complemental strand, 43638458 - 43638421
Alignment:
Q  641 tttgatgaattgtttggtataagagaaagagaagagaa 678  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  43638458 tttgatgtattgtttggtataagagaaagaaaagagaa 43638421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 578 - 610
Target Start/End: Original strand, 25827043 - 25827075
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaaga 610  Q
    |||||||||||||||||||| ||||||||||||    
T  25827043 gaagagaagttgtgaagagataaataggtaaga 25827075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 225 - 359
Target Start/End: Original strand, 24167465 - 24167599
Alignment:
Q  225 tggaagactgcaatagtttcatctagtccacttatcttcttaggattttttcg-acttgttacaacaactggtgtggattatcaggtgggattatactca 323  Q
    ||||||| |||| ||| ||| | ||| | ||||||||||||||||||||||   |||||||||||||| ||||||||||||||||||||||||||| |||    
T  24167465 tggaagattgcagtagcttcttgtagactacttatcttcttaggatttttttttacttgttacaacaattggtgtggattatcaggtgggattatattca 24167564  T
Q  324 ttgagattcttagaaatttgtgtcaacaaacgtttt 359  Q
    |||| ||||||||||| ||| |||||||||| ||||    
T  24167565 ttgatattcttagaaa-ttgagtcaacaaacatttt 24167599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 624 - 678
Target Start/End: Original strand, 3462667 - 3462721
Alignment:
Q  624 gtgaaaaatagaataggtttgatgaattgtttggtataagagaaagagaagagaa 678  Q
    |||| ||||||||||| ||||||| | ||||||||||||||||||||||||||||    
T  3462667 gtgagaaatagaatagatttgatgtagtgtttggtataagagaaagagaagagaa 3462721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 578 - 670
Target Start/End: Complemental strand, 42578605 - 42578504
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagagaatgtg--------gaaaga-gtgaaaaatagaataggtttgatgaattgtttggtataagagaaa 668  Q
    ||||||||||||||||||||||||||||||||||| | ||        |||||| |||| ||||||| ||| ||||| | ||||||||||||||||||||    
T  42578605 gaagagaagttgtgaagagagaaataggtaagagagtatgagaagagagaaagaggtgagaaatagagtagctttgagggattgtttggtataagagaaa 42578506  T
Q  669 ga 670  Q
    ||    
T  42578505 ga 42578504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 574 - 678
Target Start/End: Original strand, 27337197 - 27337312
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga----atgtg------gaaaga-gtgaaaaatagaataggtttgatgaattgtttggtataa 662  Q
    ||||||||||||||||||||||||||||||||| |||||    ||| |      |||||| |||| |||||| |||| ||||||| ||||||||||| ||    
T  27337197 tttggaagagaagttgtgaagagagaaataggtgagagagagtatgagaagagagaaagatgtgagaaataggatagatttgatgtattgtttggtagaa 27337296  T
Q  663 gagaaagagaagagaa 678  Q
    |||||||| |||||||    
T  27337297 gagaaagataagagaa 27337312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 574 - 612
Target Start/End: Original strand, 3207220 - 3207258
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  3207220 tttggaagagaagttgtgaagagagaaataggtgagaga 3207258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 578 - 612
Target Start/End: Complemental strand, 38376557 - 38376523
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||||||||||||    
T  38376557 gaagagaagttgtgaagagagaaataggtaagaga 38376523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 578 - 612
Target Start/End: Complemental strand, 41322089 - 41322055
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||||||||||||    
T  41322089 gaagagaagttgtgaagagagaaataggtaagaga 41322055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 576 - 612
Target Start/End: Original strand, 10913466 - 10913502
Alignment:
Q  576 tggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||||| |||||    
T  10913466 tggaagagaagttgtgaagagagaaataggtgagaga 10913502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 612
Target Start/End: Complemental strand, 725200 - 725169
Alignment:
Q  581 gagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||||||    
T  725200 gagaagttgtgaagagagaaataggtaagaga 725169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Original strand, 3462610 - 3462644
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||| ||||||||    
T  3462610 gaagagaagttgtgaagagagaaatatgtaagaga 3462644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 612
Target Start/End: Original strand, 37472192 - 37472230
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  37472192 tttggaagacaagttgtgaagagagaaataggtgagaga 37472230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 225 - 359
Target Start/End: Complemental strand, 46225874 - 46225739
Alignment:
Q  225 tggaagactgcaatagtttcatctagtc--cacttatcttcttaggattttttcgacttgttacaacaactggtgtggattatcaggtgggattatactc 322  Q
    ||||||| |||| ||||| ||| |||||  ||||||||||||| ||||||| |  || ||||||||||| ||||||||||||||||||||||||||| ||    
T  46225874 tggaagattgcagtagttccatgtagtctccacttatcttcttgggattttcttaacctgttacaacaattggtgtggattatcaggtgggattatattc 46225775  T
Q  323 attgagattcttagaaatttgtgtcaacaaacgtttt 359  Q
    ||||| ||||||||||| ||| |||||||||| ||||    
T  46225774 attgatattcttagaaa-ttgagtcaacaaacatttt 46225739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 46225983 - 46225904
Alignment:
Q  91 tttgatagttttctaatggtaatactttagggaattttcaactagctcatacaataggcaaagaagcatcattaacatga 170  Q
    |||||||||||||||| |||||||  ||||||||||||  |||||||||||||||||| ||  |||||| ||||||||||    
T  46225983 tttgatagttttctaaaggtaatatgttagggaattttttactagctcatacaataggaaagaaagcattattaacatga 46225904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 574 - 613
Target Start/End: Original strand, 29109248 - 29109287
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagagaa 613  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  29109248 tttggaagagaagttgtgaagagagaaataggtgagagaa 29109287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 574 - 612
Target Start/End: Complemental strand, 27516353 - 27516315
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  27516353 tttggaagagaagttgagaagagagaaataggtaagaga 27516315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 578 - 612
Target Start/End: Complemental strand, 44247752 - 44247718
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||||||||||||    
T  44247752 gaagagaagttgtgaagagagaaataggtaagaga 44247718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 579 - 612
Target Start/End: Original strand, 31880690 - 31880723
Alignment:
Q  579 aagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||||||||    
T  31880690 aagagaagttgtgaagagagaaataggtaagaga 31880723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 581 - 629
Target Start/End: Original strand, 28874321 - 28874369
Alignment:
Q  581 gagaagttgtgaagagagaaataggtaagagaatgtggaaagagtgaaa 629  Q
    ||||||||||||||||||||||| || ||||| ||||||||||| ||||    
T  28874321 gagaagttgtgaagagagaaatatgtgagagagtgtggaaagagagaaa 28874369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 606
Target Start/End: Complemental strand, 52796866 - 52796834
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggt 606  Q
    |||||||||||||||||||||||||||||||||    
T  52796866 tttggaagagaagttgtgaagagagaaataggt 52796834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 612
Target Start/End: Original strand, 36040340 - 36040375
Alignment:
Q  577 ggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||||||| |||||    
T  36040340 ggaagagaagttgtgaagagagaaataggtgagaga 36040375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 574 - 678
Target Start/End: Complemental strand, 50001989 - 50001874
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga----atgtg------gaaaga-gtgaaaaatagaataggtttgatgaattgtttggtataa 662  Q
    ||||||||||||||||| ||||||||||||||| |||||    ||| |      |||||| |||| ||||||| ||| ||||||| ||||||||||| ||    
T  50001989 tttggaagagaagttgtaaagagagaaataggtgagagagagtatgagaagagagaaagatgtgagaaatagagtagatttgatgtattgtttggtagaa 50001890  T
Q  663 gagaaagagaagagaa 678  Q
    |||||||| |||||||    
T  50001889 gagaaagataagagaa 50001874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 612
Target Start/End: Complemental strand, 4987042 - 4987004
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  4987042 tttggaagagaagttgagaagagagaagtaggtaagaga 4987004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Complemental strand, 18371120 - 18371086
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||| |||||||||||    
T  18371120 gaagagaagttgtgaagagagaagtaggtaagaga 18371086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 624 - 678
Target Start/End: Complemental strand, 45339460 - 45339406
Alignment:
Q  624 gtgaaaaatagaataggtttgatgaattgtttggtataagagaaagagaagagaa 678  Q
    |||||||||||| ||| ||||||| ||||||||| || ||||||||| |||||||    
T  45339460 gtgaaaaatagagtagatttgatggattgtttggaatgagagaaagataagagaa 45339406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Complemental strand, 46444015 - 46443981
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||| ||||||||||||||||||||||||||    
T  46444015 gaagagaaattgtgaagagagaaataggtaagaga 46443981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Complemental strand, 52099866 - 52099832
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||| ||||||||||||||    
T  52099866 gaagagaagttgtgaagagaaaaataggtaagaga 52099832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 641 - 678
Target Start/End: Complemental strand, 24088070 - 24088033
Alignment:
Q  641 tttgatgaattgtttggtataagagaaagagaagagaa 678  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  24088070 tttgatggattgtttggtataagagaaatagaagagaa 24088033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 575 - 612
Target Start/End: Original strand, 37515996 - 37516033
Alignment:
Q  575 ttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  37515996 ttggaagagaagatgtgaagagagaaataggtgagaga 37516033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 624 - 677
Target Start/End: Original strand, 39776815 - 39776868
Alignment:
Q  624 gtgaaaaatagaataggtttgatgaattgtttggtataagagaaagagaagaga 677  Q
    |||| ||||||||||| ||||||| | ||||| |||||||||||| ||||||||    
T  39776815 gtgagaaatagaatagatttgatgtagtgtttagtataagagaaacagaagaga 39776868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 629 - 678
Target Start/End: Complemental strand, 49952224 - 49952175
Alignment:
Q  629 aaatagaataggtttgatgaattgtttggtataagagaaagagaagagaa 678  Q
    ||||||| ||| |||||||| ||||||| ||||||||||| |||||||||    
T  49952224 aaatagagtagatttgatgagttgtttgatataagagaaatagaagagaa 49952175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 574 - 678
Target Start/End: Complemental strand, 470207 - 470107
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagagaatgtggaaaga-gtgaaaaatagaataggtttgatgaattgtttggtataagagaaagaga 672  Q
    |||| ||||||||||||||||||||||||| || |||||     |||||| |||| ||||||||||| ||||||| ||||||||||||||||||| ||||    
T  470207 tttgaaagagaagttgtgaagagagaaatacgtgagaga-----gaaagaagtgagaaatagaatagatttgatgtattgtttggtataagagaatgaga 470113  T
Q  673 agagaa 678  Q
    ||||||    
T  470112 agagaa 470107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 624 - 678
Target Start/End: Complemental strand, 52399338 - 52399284
Alignment:
Q  624 gtgaaaaatagaataggtttgatgaattgtttggtataagagaaagagaagagaa 678  Q
    |||| ||||||||||| ||||||| | ||||||||||||||||||||||||||||    
T  52399338 gtgagaaatagaatagatttgatgtagtgtttggtataagagaaagagaagagaa 52399284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 575 - 612
Target Start/End: Complemental strand, 25052377 - 25052340
Alignment:
Q  575 ttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25052377 ttggaagagaagttgtgaagagagaaataggtaagaga 25052340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 576 - 612
Target Start/End: Original strand, 34411337 - 34411373
Alignment:
Q  576 tggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||||||||||||||    
T  34411337 tggaagagaagttgtgaagagagaaataggtaagaga 34411373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 578 - 662
Target Start/End: Complemental strand, 11671938 - 11671846
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagagaatgtg--------gaaagagtgaaaaatagaataggtttgatgaattgtttggtataa 662  Q
    ||||||||||||||||||||||||||||||||||| | ||        |||| || || ||||||| ||| ||||||||||||||||||||||    
T  11671938 gaagagaagttgtgaagagagaaataggtaagagagtttgagaagagagaaaaagggagaaatagagtagatttgatgaattgtttggtataa 11671846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 578 - 612
Target Start/End: Complemental strand, 34413095 - 34413061
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||||||||||||    
T  34413095 gaagagaagttgtgaagagagaaataggtaagaga 34413061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 574 - 612
Target Start/End: Original strand, 56051171 - 56051209
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  56051171 tttggaagagaagttgtgaagagagaaataggtgagaga 56051209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 579 - 612
Target Start/End: Original strand, 32208273 - 32208306
Alignment:
Q  579 aagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||||||||    
T  32208273 aagagaagttgtgaagagagaaataggtaagaga 32208306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 574 - 613
Target Start/End: Original strand, 5655992 - 5656031
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagagaa 613  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  5655992 tttggaagagaagttgtgatgggagaaataggtaagagaa 5656031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 612
Target Start/End: Original strand, 22422749 - 22422787
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  22422749 tttggaagaaaagttgtgaagagagaaataggtgagaga 22422787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 624 - 678
Target Start/End: Original strand, 39121203 - 39121257
Alignment:
Q  624 gtgaaaaatagaataggtttgatgaattgtttggtataagagaaagagaagagaa 678  Q
    |||| ||||||| ||| |||||||  |||||||||||||||||||||||| ||||    
T  39121203 gtgagaaatagagtagatttgatgggttgtttggtataagagaaagagaaaagaa 39121257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Complemental strand, 40547749 - 40547715
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||| |||||    
T  40547749 gaagagaagttgtgaagagagaaataggtgagaga 40547715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Complemental strand, 47085920 - 47085886
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||| ||||||||    
T  47085920 gaagagaagttgtgaagagagaaataagtaagaga 47085886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 624 - 670
Target Start/End: Complemental strand, 49629142 - 49629096
Alignment:
Q  624 gtgaaaaatagaataggtttgatgaattgtttggtataagagaaaga 670  Q
    |||| |||||||||   ||||||||||||||||||||||||||||||    
T  49629142 gtgagaaatagaatgaatttgatgaattgtttggtataagagaaaga 49629096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 582 - 612
Target Start/End: Original strand, 52470229 - 52470259
Alignment:
Q  582 agaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||||||||    
T  52470229 agaagttgtgaagagagaaataggtaagaga 52470259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Original strand, 53062086 - 53062120
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||| ||||||||    
T  53062086 gaagagaagttgtgaagagagaaataagtaagaga 53062120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 629 - 670
Target Start/End: Original strand, 6447091 - 6447132
Alignment:
Q  629 aaatagaataggtttgatgaattgtttggtataagagaaaga 670  Q
    |||||||| || ||||||| ||||||||||||||||||||||    
T  6447091 aaatagaaaagatttgatgtattgtttggtataagagaaaga 6447132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 612
Target Start/End: Original strand, 50381877 - 50381910
Alignment:
Q  579 aagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||| ||||||||||||||    
T  50381877 aagagaagttgtgaagagaaaaataggtaagaga 50381910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 612
Target Start/End: Complemental strand, 52399394 - 52399361
Alignment:
Q  579 aagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||| ||||||||    
T  52399394 aagagaagttgtgaagagagaaataagtaagaga 52399361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 625 - 677
Target Start/End: Complemental strand, 23127392 - 23127340
Alignment:
Q  625 tgaaaaatagaataggtttgatgaattgtttggtataagagaaagagaagaga 677  Q
    ||||||||| | ||| ||||||| || |||||||| |||||||||||||||||    
T  23127392 tgaaaaataaagtagatttgatgtatggtttggtacaagagaaagagaagaga 23127340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 574 - 678
Target Start/End: Complemental strand, 3563152 - 3563048
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaa--gagaatgtggaaagagtgaaaaatagaataggtttgatgaattgtttggtataagagaaagag 671  Q
    |||||||||||||||||||||||||||||||||||  |||| ||||| ||||  || ||||||| ||| ||||||| || ||||||| |||||||||||     
T  3563152 tttggaagagaagttgtgaagagagaaataggtaagagagagtgtgggaaga--gagaaatagagtagatttgatgtatggtttggtttaagagaaagat 3563055  T
Q  672 aagagaa 678  Q
    |||||||    
T  3563054 aagagaa 3563048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 574 - 612
Target Start/End: Complemental strand, 41204020 - 41203982
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41204020 tttggaagagaagttgtgaagagagaaataggtaagaga 41203982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 574 - 612
Target Start/End: Complemental strand, 11315563 - 11315525
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  11315563 tttggaagagaagttgtgaagagagaaataggtgagaga 11315525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 578 - 612
Target Start/End: Original strand, 46290438 - 46290472
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||||||||||||    
T  46290438 gaagagaagttgtgaagagagaaataggtaagaga 46290472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 579 - 612
Target Start/End: Complemental strand, 10048308 - 10048275
Alignment:
Q  579 aagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||||||||    
T  10048308 aagagaagttgtgaagagagaaataggtaagaga 10048275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 579 - 612
Target Start/End: Original strand, 41816549 - 41816582
Alignment:
Q  579 aagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||||||||    
T  41816549 aagagaagttgtgaagagagaaataggtaagaga 41816582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 578 - 610
Target Start/End: Complemental strand, 3633040 - 3633008
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaaga 610  Q
    |||||||||||||||||||||||||||||||||    
T  3633040 gaagagaagttgtgaagagagaaataggtaaga 3633008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 606
Target Start/End: Complemental strand, 45657816 - 45657784
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggt 606  Q
    |||||||||||||||||||||||||||||||||    
T  45657816 tttggaagagaagttgtgaagagagaaataggt 45657784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 613
Target Start/End: Complemental strand, 20383959 - 20383924
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagagaa 613  Q
    |||||||||||||||||||||||||| |||||||||    
T  20383959 gaagagaagttgtgaagagagaaatatgtaagagaa 20383924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 612
Target Start/End: Complemental strand, 33989825 - 33989794
Alignment:
Q  581 gagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||||||    
T  33989825 gagaagttgtgaagagagaaataggtaagaga 33989794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 623 - 678
Target Start/End: Complemental strand, 34996812 - 34996757
Alignment:
Q  623 agtgaaaaatagaataggtttgatgaattgtttggtataagagaaagagaagagaa 678  Q
    ||||| ||||||| ||| ||||||| |||||||||||||||||| | |||||||||    
T  34996812 agtgagaaatagagtagatttgatgtattgtttggtataagagagaaagaagagaa 34996757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 612
Target Start/End: Original strand, 48402520 - 48402555
Alignment:
Q  577 ggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||||||| |||||    
T  48402520 ggaagagaagttgtgaagagagaaataggtgagaga 48402555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Original strand, 18534202 - 18534236
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||| |||||    
T  18534202 gaagagaagttgtgaagagagaaataggtgagaga 18534236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Complemental strand, 27542834 - 27542800
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||| |||||    
T  27542834 gaagagaagttgtgaagagagaaataggtgagaga 27542800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Complemental strand, 34996868 - 34996834
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||| |||||    
T  34996868 gaagagaagttgtgaagagagaaataggtgagaga 34996834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Original strand, 37031220 - 37031254
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||| |||||||||||||||||||||    
T  37031220 gaagagaagttgtaaagagagaaataggtaagaga 37031254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 612
Target Start/End: Original strand, 37545401 - 37545439
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  37545401 tttggaagagaaattgtgaagagagaaataggtgagaga 37545439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Original strand, 40091022 - 40091056
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||| ||||||||||||||    
T  40091022 gaagagaagttgtgaagagataaataggtaagaga 40091056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 624 - 677
Target Start/End: Original strand, 18791140 - 18791193
Alignment:
Q  624 gtgaaaaatagaataggtttgatgaattgtttggtataagagaaagagaagaga 677  Q
    |||| ||||||| ||| ||| ||| | |||||||||||||||||||||||||||    
T  18791140 gtgagaaatagagtagatttaatgtagtgtttggtataagagaaagagaagaga 18791193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 612
Target Start/End: Original strand, 33614099 - 33614132
Alignment:
Q  579 aagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||| ||||||||    
T  33614099 aagagaagttgtgaagagagaaatatgtaagaga 33614132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 584 - 612
Target Start/End: Original strand, 49024170 - 49024198
Alignment:
Q  584 aagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||||||    
T  49024170 aagttgtgaagagagaaataggtaagaga 49024198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 579 - 677
Target Start/End: Complemental strand, 43361540 - 43361442
Alignment:
Q  579 aagagaagttgtgaagagagaaataggtaa--gagaatgtggaaagagtgaaaaatagaataggtttgatgaattgtttggtataagagaaagagaagag 676  Q
    ||||||||||||||||||||||||||||||  |||| ||||| ||||  || ||||||| ||  ||||||| |||||||||| ||||||||| |||||||    
T  43361540 aagagaagttgtgaagagagaaataggtaagagagagtgtgggaaga--gagaaatagagtaaatttgatgtattgtttggtttaagagaaaaagaagag 43361443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 574 - 678
Target Start/End: Original strand, 43360283 - 43360398
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggta--agagaatgtggaaagag---------tgaaaaatagaataggtttgatgaattgtttggtataa 662  Q
    ||||||||||||||||||||||||||||||||||  ||||| ||||| |||||         ||| ||||||| ||| ||||||| |||||||||| |||    
T  43360283 tttggaagagaagttgtgaagagagaaataggtaagagagagtgtgggaagagagaaatagatgagaaatagagtagatttgatgtattgtttggtttaa 43360382  T
Q  663 gagaaagagaagagaa 678  Q
    |||||||| |||||||    
T  43360383 gagaaagataagagaa 43360398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 574 - 612
Target Start/End: Complemental strand, 23202038 - 23202000
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23202038 tttggaagagaagttgtgaagagagaaataggtaagaga 23202000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 576 - 612
Target Start/End: Complemental strand, 10617361 - 10617325
Alignment:
Q  576 tggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||||||||||||||    
T  10617361 tggaagagaagttgtgaagagagaaataggtaagaga 10617325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 576 - 612
Target Start/End: Complemental strand, 29733328 - 29733292
Alignment:
Q  576 tggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||||||||||||||    
T  29733328 tggaagagaagttgtgaagagagaaataggtaagaga 29733292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 629 - 672
Target Start/End: Complemental strand, 29232601 - 29232558
Alignment:
Q  629 aaatagaataggtttgatgaattgtttggtataagagaaagaga 672  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||    
T  29232601 aaatagagtagatttgatgaattgtttggtataagagaaagaga 29232558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 574 - 612
Target Start/End: Complemental strand, 2167833 - 2167795
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  2167833 tttggaagagaagttgtgaagagagaaataggtgagaga 2167795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 574 - 612
Target Start/End: Complemental strand, 26940463 - 26940425
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  26940463 tttggaagagaagttgtgaagatagaaataggtaagaga 26940425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 578 - 612
Target Start/End: Original strand, 38674186 - 38674220
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||||||||||||    
T  38674186 gaagagaagttgtgaagagagaaataggtaagaga 38674220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Original strand, 11427558 - 11427592
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||| ||||||||    
T  11427558 gaagagaagttgtgaagagagaaatatgtaagaga 11427592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 604
Target Start/End: Complemental strand, 13703306 - 13703276
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaatag 604  Q
    |||||||||||||||||||||||||||||||    
T  13703306 tttggaagagaagttgtgaagagagaaatag 13703276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 624 - 678
Target Start/End: Complemental strand, 26940402 - 26940348
Alignment:
Q  624 gtgaaaaatagaataggtttgatgaattgtttggtataagagaaagagaagagaa 678  Q
    |||| ||||||| ||| ||||||| ||||||||||| |||||||||| |||||||    
T  26940402 gtgagaaatagagtagatttgatgtattgtttggtagaagagaaagataagagaa 26940348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 612
Target Start/End: Original strand, 30724600 - 30724638
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  30724600 tttggaagagaagttgtaaagagagaaataggtgagaga 30724638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Original strand, 46085538 - 46085572
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||| |||||||||||||||||||||||    
T  46085538 gaagagaagttatgaagagagaaataggtaagaga 46085572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 629 - 678
Target Start/End: Original strand, 5187027 - 5187076
Alignment:
Q  629 aaatagaataggtttgatgaattgtttggtataagagaaagagaagagaa 678  Q
    ||||||| ||| ||| ||| |||||||||||||| |||||||||||||||    
T  5187027 aaatagagtagatttaatgtattgtttggtataaaagaaagagaagagaa 5187076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 612
Target Start/End: Original strand, 30613034 - 30613067
Alignment:
Q  579 aagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||||| |||||    
T  30613034 aagagaagttgtgaagagagaaataggtgagaga 30613067  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 612
Target Start/End: Original strand, 30720925 - 30720958
Alignment:
Q  579 aagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||| |||||||||||||||||||||||||||||    
T  30720925 aagaaaagttgtgaagagagaaataggtaagaga 30720958  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 574 - 603
Target Start/End: Original strand, 45707972 - 45708001
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaata 603  Q
    ||||||||||||||||||||||||||||||    
T  45707972 tttggaagagaagttgtgaagagagaaata 45708001  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 580 - 612
Target Start/End: Complemental strand, 34918484 - 34918452
Alignment:
Q  580 agagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||| ||||||||||||||||||    
T  34918484 agagaagttgtgaatagagaaataggtaagaga 34918452  T

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Target: scaffold0385 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 575 - 612
Target Start/End: Complemental strand, 11935 - 11898
Alignment:
Q  575 ttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11935 ttggaagagaagttgtgaagagagaaataggtaagaga 11898  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 580 - 670
Target Start/End: Complemental strand, 16364006 - 16363920
Alignment:
Q  580 agagaagttgtgaagagagaaataggtaagagaatgtggaaaga-gtgaaaaatagaataggtttgatgaattgtttggtataagagaaaga 670  Q
    |||||||||||||||||||||||||||||||||     |||||| |||| ||||| ||||| ||||| || ||||||| ||||| |||||||    
T  16364006 agagaagttgtgaagagagaaataggtaagaga-----gaaagaggtgagaaataaaatagatttgaggagttgtttgatataaaagaaaga 16363920  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 574 - 612
Target Start/End: Complemental strand, 11447354 - 11447316
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  11447354 tttggaagagaagttgtgaagagagaaataggtgagaga 11447316  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 678
Target Start/End: Original strand, 13760971 - 13761020
Alignment:
Q  629 aaatagaataggtttgatgaattgtttggtataagagaaagagaagagaa 678  Q
    ||||||| ||| ||||||| ||||||||||| ||||||||||||||||||    
T  13760971 aaatagagtagatttgatggattgtttggtacaagagaaagagaagagaa 13761020  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Complemental strand, 1157103 - 1157069
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||| |||||    
T  1157103 gaagagaagttgtgaagagagaaataggtgagaga 1157069  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Original strand, 8223829 - 8223863
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||| |||||||    
T  8223829 gaagagaagttgtgaagagagaaatagataagaga 8223863  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 632
Target Start/End: Complemental strand, 26647866 - 26647808
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagagaatgtggaaagagtgaaaaat 632  Q
    |||||||||||||||||||| |||| ||||||| |||||  |||| ||||| |||||||    
T  26647866 tttggaagagaagttgtgaaaagagcaataggtgagagagagtgggaagagagaaaaat 26647808  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 632
Target Start/End: Complemental strand, 26919451 - 26919393
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagagaatgtggaaagagtgaaaaat 632  Q
    |||||||||||||||||||| |||| ||||||| |||||  |||| ||||| |||||||    
T  26919451 tttggaagagaagttgtgaaaagagcaataggtgagagagagtgggaagagagaaaaat 26919393  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 612
Target Start/End: Original strand, 38503524 - 38503562
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  38503524 tttggaagagaagttgagaagagagaagtaggtaagaga 38503562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 612
Target Start/End: Original strand, 9780179 - 9780212
Alignment:
Q  579 aagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||| ||||||||||||||||    
T  9780179 aagagaagttgtgaagatagaaataggtaagaga 9780212  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 629 - 678
Target Start/End: Original strand, 18515710 - 18515759
Alignment:
Q  629 aaatagaataggtttgatgaattgtttggtataagagaaagagaagagaa 678  Q
    ||||||| ||| ||| ||| |||||||||||||| |||||||||||||||    
T  18515710 aaatagagtagatttaatgtattgtttggtataaaagaaagagaagagaa 18515759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 624 - 672
Target Start/End: Complemental strand, 1157046 - 1156998
Alignment:
Q  624 gtgaaaaatagaataggtttgatgaattgtttggtataagagaaagaga 672  Q
    |||| ||||||| ||| ||||||| || |||||||||||||||||||||    
T  1157046 gtgagaaatagagtagatttgatgtatagtttggtataagagaaagaga 1156998  T

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Target: scaffold0380 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 574 - 612
Target Start/End: Original strand, 58 - 96
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  58 tttggaagagaagttgtgaagagagaaataggtgagaga 96  T

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Target: scaffold0072 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 574 - 612
Target Start/End: Original strand, 46525 - 46563
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  46525 tttggaagagaagttgtgaagagagaaataggtgagaga 46563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 574 - 612
Target Start/End: Original strand, 35972 - 36010
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  35972 tttggaagagaagttgtgaagagagaaataggtgagaga 36010  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 578 - 612
Target Start/End: Original strand, 9244764 - 9244798
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||||||||||||    
T  9244764 gaagagaagttgtgaagagagaaataggtaagaga 9244798  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 606
Target Start/End: Original strand, 251810 - 251842
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggt 606  Q
    |||||||||||||||||||||||||||||||||    
T  251810 tttggaagagaagttgtgaagagagaaataggt 251842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 612
Target Start/End: Original strand, 3711439 - 3711477
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  3711439 tttggaagagaagttgtgaagagagaaagaggtgagaga 3711477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 624 - 678
Target Start/End: Original strand, 10365013 - 10365067
Alignment:
Q  624 gtgaaaaatagaataggtttgatgaattgtttggtataagagaaagagaagagaa 678  Q
    |||| ||||| | ||| ||||||| ||||||||||||||||||||||||| ||||    
T  10365013 gtgagaaataaagtagatttgatggattgtttggtataagagaaagagaaaagaa 10365067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Complemental strand, 13887282 - 13887248
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    ||||||||||||||||||||||||||||| |||||    
T  13887282 gaagagaagttgtgaagagagaaataggtgagaga 13887248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 582 - 612
Target Start/End: Original strand, 32818743 - 32818773
Alignment:
Q  582 agaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||||||||||||||    
T  32818743 agaagttgtgaagagagaaataggtaagaga 32818773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 574 - 611
Target Start/End: Complemental strand, 7341345 - 7341308
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagag 611  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  7341345 tttggaagagaaattgtgaagagagaaataggtgagag 7341308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 578 - 610
Target Start/End: Original strand, 13045 - 13077
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaaga 610  Q
    |||||||||||||||||||||||||||||||||    
T  13045 gaagagaagttgtgaagagagaaataggtaaga 13077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Original strand, 1501 - 1535
Alignment:
Q  578 gaagagaagttgtgaagagagaaataggtaagaga 612  Q
    |||||||||||||||||||| ||||||||||||||    
T  1501 gaagagaagttgtgaagagataaataggtaagaga 1535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 574 - 611
Target Start/End: Original strand, 12351 - 12388
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagag 611  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  12351 tttggaagagaaattgtgaagagagaaataggtgagag 12388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 574 - 611
Target Start/End: Original strand, 9992 - 10029
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagag 611  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  9992 tttggaagagaaattgtgaagagagaaataggtgagag 10029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 574 - 611
Target Start/End: Original strand, 13658 - 13695
Alignment:
Q  574 tttggaagagaagttgtgaagagagaaataggtaagag 611  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  13658 tttggaagagaaattgtgaagagagaaataggtgagag 13695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 629 - 677
Target Start/End: Complemental strand, 13936 - 13888
Alignment:
Q  629 aaatagaataggtttgatgaattgtttggtataagagaaagagaagaga 677  Q
    ||||||| ||| ||||| | |||||||||| ||||||||||||||||||    
T  13936 aaatagagtagatttgaggtattgtttggtttaagagaaagagaagaga 13888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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