View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14975_low_11 (Length: 389)
Name: NF14975_low_11
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14975_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 389
Target Start/End: Complemental strand, 24893594 - 24893237
Alignment:
| Q |
19 |
ctagttgagtaaattttttaaaagaaaatattagagaatgtatagtaannnnnnnagtaatgagacaattctaagatgtttgagaccgattacaagttta |
118 |
Q |
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| T |
24893594 |
ctagttgagtaaattttttaaaagaaaatattagagaatgtatagtaatttttt-agtaatgagacaattctaagatgtttgagaccgattacaagttta |
24893496 |
T |
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| Q |
119 |
tcagaattagaatagaactttatcaactatgtgtatgcattaaaacaaccggtccagtttatttccgaaaaccaaaacatnnnnnnnnnnnnnnnncacc |
218 |
Q |
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| T |
24893495 |
tcagaattagaatagaactttatcaactatgtgtatgcattaaaacaaccggtccaatttatttttgaaaaccaaaacattatatatatatatatatacc |
24893396 |
T |
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| Q |
219 |
actttttctcataaatcaaaaacacttatttctcctcacttctctctcatttccacaacaacacattcccccaccattacgaatcacacaaaagagaaat |
318 |
Q |
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| T |
24893395 |
actttttctcataaatcaaaaacacttatttctc------------tcatttccacaacaacgcattcccccaccattacgaatcacacaaaagagaaat |
24893308 |
T |
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| Q |
319 |
caaaatgaagccctcgaagattcgattcctaccttcctacgcgtgattcactgctattcgatgtggtattc |
389 |
Q |
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| T |
24893307 |
caaaatgaagccctcgacgattcgattcctaccttcctacgcgtgattcactgctattcgatgtggtattc |
24893237 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 31347950 - 31348022
Alignment:
| Q |
80 |
gagacaattctaagatgtttgagaccgattacaagtttatcagaattagaatagaactttatcaactatgtgta |
153 |
Q |
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| T |
31347950 |
gagacaattctaagatgtttgggaccgattagaagtccatctgagttag-atagaactttatcagttatgtgta |
31348022 |
T |
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