View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14975_low_13 (Length: 378)
Name: NF14975_low_13
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14975_low_13 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 40 - 378
Target Start/End: Complemental strand, 8358588 - 8358245
Alignment:
| Q |
40 |
caagcaacgtgtgaaaatcacgcccgtgaattatttatttcctctataatattactcgtaagcaatataattgagtttaaaatatgtctctcatattttc |
139 |
Q |
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| T |
8358588 |
caagcaacgtgtgaaaatcacgtccgtgaattatttatttcctctataatattacttgtaagcaatataattgagtttaaaatatgtctctcatattttc |
8358489 |
T |
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| Q |
140 |
ttttctaaattaatataatataat-----taatgttgtgatctctctgtaatttgttgcagaacaagtctcctagatttgttaacggtgagaaagcacaa |
234 |
Q |
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| T |
8358488 |
ttttctaaattaatataatataatataattaatgttgtgatctctctgtaatttgttgcagaacaagtctcctagatttgttaacggtgagaaagcacaa |
8358389 |
T |
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| Q |
235 |
gtaaacatgttcttcaagttcttccaactcatccaaaaagctagactcttgatcactaaattcactcataaacctcttcaatatttcacatttactacca |
334 |
Q |
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| T |
8358388 |
gtaaacatgttcttcaagttcttccaactcatccaaaaatcttgactcttgatcactaaattcactcataaacctcttcaatatttcacatttactacca |
8358289 |
T |
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| Q |
335 |
acattcttcacacaaacttgagcaaccatttttctatgttccac |
378 |
Q |
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| T |
8358288 |
acattcttcacacaaacttgagcaaccatttttctatgttccac |
8358245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 177 - 378
Target Start/End: Original strand, 28593124 - 28593328
Alignment:
| Q |
177 |
tctctgtaatttgttgcagaacaagtctcctagatttgttaacggtgagaaagcacaagtaaacatgttcttcaagttcttccaactcatccaaaaagct |
276 |
Q |
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| T |
28593124 |
tctctgtaatttgttgcataacaagtctcctagatttattgatggtaagaaagcacaagtaaacatgttcttcaagctcttccaactgatccaaaaagct |
28593223 |
T |
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| Q |
277 |
agactcttgatcactaaattcactcataaacctcttcaatatttcacatttactaccaac---attcttcacacaaacttgagcaaccatttttctatgt |
373 |
Q |
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| T |
28593224 |
agactcttgatctcgatattcactcataaccctcttcaatatttcacatttactaccaacattattcttcacacaaacatcagcaaaaattttcctatgc |
28593323 |
T |
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| Q |
374 |
tccac |
378 |
Q |
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| T |
28593324 |
tccac |
28593328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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