View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14975_low_18 (Length: 343)
Name: NF14975_low_18
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14975_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 40504055 - 40504381
Alignment:
| Q |
1 |
taaaaaacgtgcagaagtttaggatggcgaataatcttttcaccctaaacaggctgttgtcagcttcatattcgataaagaatgtaaattgtgtcaagaa |
100 |
Q |
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| T |
40504055 |
taaaaaacgtgcagaagtttaggatggctaataatcttttcaccctaaacaggctgttgtcagcttcatattcgataaagaatgtaaattgtgtcaagaa |
40504154 |
T |
|
| Q |
101 |
aacattaagatagcagctacagaaacttacatttagcatatatctcattgactttcttaaaatccttcaagtcagccaacctgcatgnnnnnnntgttca |
200 |
Q |
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| T |
40504155 |
aacattaagatcgcagctacagaaacttacatttagcatatatctcattgactttcttaaaatccttcaagtcagccaacctgcatgaaaaaaatgttca |
40504254 |
T |
|
| Q |
201 |
aaaaatagttatcttgcattctcgcaaggactcagtaaaaaccaactatagaaggtagaggagtccatacataattgttgtcttaacaactgatgagtag |
300 |
Q |
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| T |
40504255 |
aaaaatagttatcttgcattctcgcaaggacttagtaaaaaccaactatagaaggtagaggagtccatacataattgttgtcttaacaactgatgagtag |
40504354 |
T |
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| Q |
301 |
ctggcaccaccagctttaagaatttcc |
327 |
Q |
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| T |
40504355 |
ctggcaccaccagctttaagaatttcc |
40504381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 20482275 - 20482335
Alignment:
| Q |
123 |
aaacttacatttagcatatatctcattgactttcttaaaatccttcaagtcagccaacctg |
183 |
Q |
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| T |
20482275 |
aaacttacatttagcatagatctcattaactttcttgaagtccttcaagtcggccaacctg |
20482335 |
T |
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