View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14975_low_21 (Length: 324)
Name: NF14975_low_21
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14975_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 315
Target Start/End: Complemental strand, 6232731 - 6232433
Alignment:
| Q |
20 |
atgattaccggagaacccgc---atggaatgagtcagatatgttaatgttgacgattcgaattggggttggagaagaattgccaaagattccagacgaat |
116 |
Q |
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| T |
6232731 |
atgattaccggagaacccgccgcatggaatgaatcagatatgttgatgttgacgattcgaattggtgttggagaagaattgccaaaaattccagaggaat |
6232632 |
T |
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| Q |
117 |
tatcacaagaaggaaaagattttctagaaaagtgtttcattaaggatcctttgagaagatggacagcagatatgctcttcaaacatccgtttatctccga |
216 |
Q |
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| T |
6232631 |
tatcacaagaaggaaaagattttttagaaaagtgtttcattaaggatcctttgagaagatggacagcagatatgctcttcaaacatccgtttatctccga |
6232532 |
T |
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| Q |
217 |
tgttgaaactgtttcagttgtaaatgagttagttgatgagttgccattgtcttcaccttctccaaaaacttacttcaatatgctcattgtgtttcttct |
315 |
Q |
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| T |
6232531 |
tgttgaaactgtttcagttgtaaatgagttagttgatgagttgccattgtcttcaccttctccaaaaacttacttcaatatgctcattgtgtttcttct |
6232433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 267
Target Start/End: Complemental strand, 6221863 - 6221699
Alignment:
| Q |
103 |
gattccagacgaattatcacaagaaggaaaagattttctagaaaagtgtttcattaaggatcctttgagaagatggacagcagatatgctcttcaaacat |
202 |
Q |
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||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |||||||||| | ||||||||| ||||| ||||| || |||||| |
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| T |
6221863 |
gattccagatgaattatcacaagtcggaaaagattttctcgaaaagtgtttcatcaaggatccttcaaaaagatggacggcagagatgcttttgaaacat |
6221764 |
T |
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| Q |
203 |
ccgtttatctccgatgttgaaactgtttcagttgtaaatgagttagttgatgagttgccattgtc |
267 |
Q |
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| T |
6221763 |
gagtttatctcaggtgatgaaactgtttcattggtgaaagagttgatcaatgagttgccattgtc |
6221699 |
T |
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