View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14975_low_23 (Length: 312)
Name: NF14975_low_23
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14975_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 52982579 - 52982863
Alignment:
| Q |
18 |
aggattagtggctaataaataaacaaattgtcacagctaatgaggtgtttaaaatgtgttatcttagggttttaaatcccaaaaggcgctgttaatgaac |
117 |
Q |
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| T |
52982579 |
aggattagtggctaataaataaacaaattgtcacagctaatgaggtgtttaaaatgtgttatcttagggttttaaatcccaaaaggcgctgttaatgaac |
52982678 |
T |
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| Q |
118 |
tgggccgcagacccgaccctcgaaaatatatctgagaaacccaataatggaaacaacatgtttgcacgattccaccgctcccacgatttttcgcagagat |
217 |
Q |
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| T |
52982679 |
tgggctgcagacccgaccctcgaaaatatatctgagaaacccaataatggaaacgacatgtttgcacgattccaccgctcccacgatttttcgcagcgat |
52982778 |
T |
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| Q |
218 |
cccagccaagccaaccaactttcgattccagacatacacgagcatgccaagggttggctagactgtataagcgtacgatcctatg |
302 |
Q |
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| T |
52982779 |
cccagccaagccaaccaactttcgattccagacatacacgagcatgccaagggttggctagactgtataagcgtacgatcttatg |
52982863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 55618926 - 55618982
Alignment:
| Q |
241 |
gattccagacatacacgagcatgccaagggttggctagactgtataagcgtacgatc |
297 |
Q |
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| T |
55618926 |
gattccagtcgtacacgagcacgccaaggggtggcaagactgtagtagcgtacgatc |
55618982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 55626230 - 55626286
Alignment:
| Q |
241 |
gattccagacatacacgagcatgccaagggttggctagactgtataagcgtacgatc |
297 |
Q |
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| T |
55626230 |
gattccagtcgtacacgagcacgccaaggggtggcaagactgtagtagcgtacgatc |
55626286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 24020900 - 24021014
Alignment:
| Q |
47 |
gtcacagctaatgaggtgtttaaaatgtgttatcttagggttttaaatcccaaaaggcgctgttaatgaactgggccgcagacccgaccctcgaaaatat |
146 |
Q |
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|||||||||||||||||||||||| ||||||| || ||||||||||||||||||| | ||||||||| ||| | ||||||| |||| |||||| || |
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| T |
24020900 |
gtcacagctaatgaggtgtttaaa--gtgttatttt-gggttttaaatcccaaaagatgtgtttaatgaaccgggtcacagaccctacccacgaaaacat |
24020996 |
T |
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| Q |
147 |
atctgagaaacccaataa |
164 |
Q |
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| T |
24020997 |
atctgagaaacccaataa |
24021014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 88 - 209
Target Start/End: Original strand, 7736985 - 7737104
Alignment:
| Q |
88 |
tttaaatcccaaaaggcgctgttaatgaactgggccgcagacccgaccctcgaaaatatatctgagaaacccaataatggaaacaacatgtttgcacgat |
187 |
Q |
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|||||||||||||||| || | ||||||||||| ||| ||||||| || | |||| |||||||||||||||||||| |||| | ||| || || ||| |
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| T |
7736985 |
tttaaatcccaaaaggtgca-tcaatgaactgggtcgctgacccgatccac-aaaacatatctgagaaacccaataaaggaatcgacagattcacatgat |
7737082 |
T |
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| Q |
188 |
tccaccgctcccacgatttttc |
209 |
Q |
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| T |
7737083 |
tccaccgctcccacgatttttc |
7737104 |
T |
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