View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14975_low_29 (Length: 279)
Name: NF14975_low_29
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14975_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 24892858 - 24893111
Alignment:
| Q |
17 |
cataggttcatttcaaacgtctcaacgaggcgaatttattggtcaatttgttttcacaattcaacattccaaaaatgatgaaaa--tacccctcaaagtc |
114 |
Q |
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| T |
24892858 |
cataggttcatttcaaacgtctcgacgaggcgaatttattggtcaatttgttttcacagttcaacattccaaaaatgatgaaaaaataaccctcaaagtc |
24892957 |
T |
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| Q |
115 |
acagttgttttaacccaacattatttttcgaaaaccaatcggttaaatcaactcatttactcatctaaatcataaatattaaatgaaattcatatttgga |
214 |
Q |
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| T |
24892958 |
acagttgttttaacccaacattatttttcgaaaaccaatcggttgaatcaactcatttactcatctaaatcataaatattaaatgaaattcatatttgga |
24893057 |
T |
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| Q |
215 |
cacttttttaaaaattctaaaattttaaaatagtcggatcctaaatatttttgc |
268 |
Q |
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| T |
24893058 |
cacttttctaaaaattctaaaattttaaaatagtcggatcctaaatatttttgc |
24893111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 267
Target Start/End: Complemental strand, 31348782 - 31348652
Alignment:
| Q |
137 |
atttttcgaaaaccaatcggttaaatcaactcatttactcatctaaatcataaatattaaatgaaattcatatttggacacttttttaaaaattctaaaa |
236 |
Q |
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|||||| |||||| ||| |||| ||||||||||||||||| |||| ||||||||||| |||| ||||||| |||| ||||||||| || ||| |||||| |
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| T |
31348782 |
attttttgaaaacaaataggttgaatcaactcatttactcgtctatatcataaatatcaaataaaattcacatttagacacttttccaataatgctaaaa |
31348683 |
T |
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| Q |
237 |
ttttaaaatagtcggatcctaaatatttttg |
267 |
Q |
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||| |||||||||| ||| |||||||||||| |
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| T |
31348682 |
tttaaaaatagtcgaatcataaatatttttg |
31348652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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