View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14975_low_30 (Length: 270)
Name: NF14975_low_30
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14975_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 10357905 - 10357678
Alignment:
| Q |
19 |
ccttgttctgtagacctttggagaaactgaaggattggttgctatgtgaaaatctatacgctgagtgagtttactgaaatataccacagttagctagatt |
118 |
Q |
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| T |
10357905 |
ccttgttctgtagacctttggagaaactgaaggattggttgctatgtgaaaatctatacgcagagtgagtttactgaaatatacaacagttagctagagt |
10357806 |
T |
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| Q |
119 |
ttttatgatatgaactagattttttcatcttcattatttaaaacaaaaagttatctactccgtttcctgattaaaagctttttgattgtgtgatgaggtc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10357805 |
ttttatgatatgaactagattttttcatcttcattatttaaaacaaaaagttatctactccgttttctgattaaaagctttttgattgtgtgatgaggtc |
10357706 |
T |
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| Q |
219 |
gttttcgactttcgtttcttttcactcg |
246 |
Q |
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| T |
10357705 |
gttttcgactttcgtttctttgcactcg |
10357678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 10132316 - 10132543
Alignment:
| Q |
19 |
ccttgttctgtagacctttggagaaactgaaggattggttgctatgtgaaaatctatacgctgagtgagtttactgaaatataccacagttagctagatt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||| ||||||||||||||| |
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| T |
10132316 |
ccttgttctgtagacctttggagaaactgaaggattggttgctatgtgaaactctatacacagagtgagtttactgaaatatacaacagttagctagatt |
10132415 |
T |
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| Q |
119 |
ttttatgatatgaactagattttttcatcttcattatttaaaacaaaaagttatctactccgtttcctgattaaaagctttttgattgtgtgatgaggtc |
218 |
Q |
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| T |
10132416 |
ttttataatatgaactagattttttcatcttcattatttaaaacaaaaagttttctacttcgttttctgattaaaagctttttgattgtgtgatgaggtc |
10132515 |
T |
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| Q |
219 |
gttttcgactttcgtttcttttcactcg |
246 |
Q |
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| T |
10132516 |
gttttcgactttcgtttctttgcactcg |
10132543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 10101239 - 10101333
Alignment:
| Q |
19 |
ccttgttctgtagacctttggagaaactgaaggattggttgctatgtgaaaatctatacgctgagtgagtttactgaaatataccacagttagct |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||| |
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| T |
10101239 |
ccttgttctgtagacctttggagaaactgaaggattggttgctatgtgaaaatctataagcagagtgagtttactgaaatatacaacagttagct |
10101333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 10212164 - 10212258
Alignment:
| Q |
19 |
ccttgttctgtagacctttggagaaactgaaggattggttgctatgtgaaaatctatacgctgagtgagtttactgaaatataccacagttagct |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||| |
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| T |
10212164 |
ccttgttctgtagacctttggagaaactgaaggattggttgctatgtgaaaatctataagcagagtgagtttactgaaatatacaacagttagct |
10212258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 117 - 245
Target Start/End: Original strand, 10072930 - 10073061
Alignment:
| Q |
117 |
ttttttatgatatgaactagattttttcatcttcattatt---taaaacaaaaagttatctactccgtttcctgattaaaagctttttgattgtgtgatg |
213 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||||| | || | || |||||||||| |||||||||||||||||||||||||||| |
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| T |
10072930 |
ttttttatgatatgaactagattctttcatcttcattattctataaaaaagcaaatgatatactccgttttctgattaaaagctttttgattgtgtgatc |
10073029 |
T |
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| Q |
214 |
aggtcgttttcgactttcgtttcttttcactc |
245 |
Q |
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| T |
10073030 |
aggtcgttttcgactttcgtttctttgcactc |
10073061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 10135007 - 10135129
Alignment:
| Q |
117 |
ttttttatgatatgaactagattttttcatcttcattattt--aaaacaaaaagttatctactccgtttcctgattaaaagctttttgattgtgtgatga |
214 |
Q |
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|||||||| |||| |||||||||||||||||||||||||| |||| ||||| | || |||||| ||| |||||||||| ||||||||||| ||||| | |
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| T |
10135007 |
ttttttattatat-aactagattttttcatcttcattattctaaaaaaaaaaaatgatatactccattttctgattaaaa-ctttttgattgcgtgatca |
10135104 |
T |
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| Q |
215 |
ggtcgttttcgactttcgtttcttt |
239 |
Q |
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| T |
10135105 |
gatcgttttcgactttcgtttcttt |
10135129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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