View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14975_low_32 (Length: 262)

Name: NF14975_low_32
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14975_low_32
NF14975_low_32
[»] chr1 (2 HSPs)
chr1 (19-255)||(32244392-32244628)
chr1 (19-255)||(32250101-32250337)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 32244628 - 32244392
Alignment:
Q  19 aatttctactttaattactccatacatctatatatttgagtctgagcaacactgttatggcttaatgaaaactgtaaatgaataaagtagagtgaaaaag 118  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||| ||||||||||    
T  32244628 aatttctactttaatcactacatacatctatatatttgagtctgagcaacactgttactgcttaatgaaaactgtaaatgaattaagtaaagtgaaaaag 32244529  T
Q  119 aagtaatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagtcatgattcc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32244528 aagtaatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagtcatgattcc 32244429  T
Q  219 atatgtaaagataccaacaaatatacactctgtgatg 255  Q
    |||||||||||||||||||||||||||||||||||||    
T  32244428 atatgtaaagataccaacaaatatacactctgtgatg 32244392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 32250337 - 32250101
Alignment:
Q  19 aatttctactttaattactccatacatctatatatttgagtctgagcaacactgttatggcttaatgaaaactgtaaatgaataaagtagagtgaaaaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32250337 aatttctactttaattactccatacatctatatatttgagtctgagcaacactgttacggcttaatgaaaactgtaaatgaataaagtagagtgaaaaag 32250238  T
Q  119 aagtaatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagtcatgattcc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  32250237 aagtaatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatatatttgttctcattcatttaactgcagtcaggattcc 32250138  T
Q  219 atatgtaaagataccaacaaatatacactctgtgatg 255  Q
    |||||| |||||| |||||||||||| ||||||||||    
T  32250137 atatgtgaagatagcaacaaatataccctctgtgatg 32250101  T

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