View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14975_low_33 (Length: 261)
Name: NF14975_low_33
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14975_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 25543079 - 25543330
Alignment:
| Q |
1 |
actggcccaacatgaccagcaaaatgaggatatgaatctagcctccacagttcttgtacctcaatcatcggagacattgaatattgggttagtgtatttt |
100 |
Q |
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| T |
25543079 |
actggcccaacttgagcagcaaaatgaggatatgaatctagcctccacagttcttgtacctcaatcattggagacattgaatattgggttagtgtatttt |
25543178 |
T |
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| Q |
101 |
agctatatagggacacagacacggacatcatacctgatacaaacact--------gacactaataataatttcaagaaatgatataattcatatgtcagt |
192 |
Q |
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| T |
25543179 |
acctatatacggacacagagacggacatcgtatctgacacgaacactgacacgtcgacactaataataatttcaagaaatgatataattcatgtgtcagt |
25543278 |
T |
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| Q |
193 |
gtcgtgtcggtgtcatgcacggacgcgtatccgacaccagaacacacctaat |
244 |
Q |
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| T |
25543279 |
gttgtgtcggtgtcatgcacggactcgtatccgacaccagaacacacgtaat |
25543330 |
T |
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Back To:
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 10133756 - 10133804
Alignment:
| Q |
196 |
gtgtcggtgtcatgcacggacgcgtatccgacaccagaacacacctaat |
244 |
Q |
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| T |
10133756 |
gtgtcggtgtcagacactgacgcgtgtccgacaccaggacacacctaat |
10133804 |
T |
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