View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14975_low_37 (Length: 240)
Name: NF14975_low_37
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14975_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 8422023 - 8421807
Alignment:
| Q |
10 |
agaagaaggagaattgtacttgggtgaataatgataatcattttcttgaatcattattggcattgtgtgtatgagttgaccgtttaattcttcaaacagc |
109 |
Q |
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| T |
8422023 |
agaagaaggagaattgtacttgggtgaataatgataatcattttcttgaatcattattgggattgtgtgtatgagttgaccgtttaattcttcaaacagc |
8421924 |
T |
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| Q |
110 |
ttcctgcttggtcttgtttttggaactatggaaagagctttagggagttttggaacattgaaagaggatttaatcattttttgatctgaagaaaaagaag |
209 |
Q |
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| T |
8421923 |
ttcctgcttggtcttgtttttggaactatggaaagagctttagggagttttggaacattgaaagaggatttaatcattttttgatctgaagaaaaagaag |
8421824 |
T |
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| Q |
210 |
aaagcatagatgaaact |
226 |
Q |
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||||||||||||||||| |
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| T |
8421823 |
aaagcatagatgaaact |
8421807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 8400446 - 8400224
Alignment:
| Q |
10 |
agaagaaggagaattgtacttgggtgaataatgataatcattttcttgaatcattattggcattgtgtgtatgagttgaccgtttaattcttcaaacagc |
109 |
Q |
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| T |
8400446 |
agaagaaggagaattgtacttgggtgaataatgataatcattttcttgaatcattattgggattgtgtgtttgagttggccgtttaattcctcaattagt |
8400347 |
T |
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| Q |
110 |
ttcctgcttggtcttgtttttggaactatggaaagagctttagggagttttggaacattgaaagaggatttaatcatttttt-----gat-ctgaagaaa |
203 |
Q |
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| T |
8400346 |
tttctacttggtcttatatttggagctatggaaagaactttaggaagttttgggacattgaaagatgatttaatcactatttctgaagatgatgaagaaa |
8400247 |
T |
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| Q |
204 |
aagaagaaagcatagatgaaact |
226 |
Q |
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| T |
8400246 |
aagaagaaagcatagatgaaact |
8400224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 8368964 - 8369131
Alignment:
| Q |
10 |
agaagaaggagaattgtacttgggtgaataatgataatcattttcttgaatcattattggcattgtgtgtatgagttgaccgtttaattcttcaaacagc |
109 |
Q |
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||||||||| |||| |||||||||||||| ||||||||||||||||||| |||||||| ||||||||| | ||||| |||||||| || ||||| ||| |
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| T |
8368964 |
agaagaaggggaatagtacttgggtgaat---gataatcattttcttgaattattattgggattgtgtgtgtaagttggccgtttaactcctcaaatagc |
8369060 |
T |
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| Q |
110 |
ttcctgcttggtcttgtttttggaactatggaaagagctttagggagttttggaacattgaaagaggattt |
180 |
Q |
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| T |
8369061 |
tttctgcttggtcttgtttttggaactatggaaagaactttagggagttttgggacattgaaagatgattt |
8369131 |
T |
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