View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14975_low_38 (Length: 238)
Name: NF14975_low_38
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14975_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 45039279 - 45039501
Alignment:
| Q |
1 |
tgtaatatattatattaaacctagatgaatgagtaaatttttata--gtggttatcattggatagatgctatacaataaaaattatctaatggatgtgta |
98 |
Q |
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| T |
45039279 |
tgtaatatattatattaaacctagatgaatgagtaaatttttatatagtagttatcattggatagaagctacaaactaaaaactatctaatgtctgtgta |
45039378 |
T |
|
| Q |
99 |
gattgataaggttcatgtggtaacggaagctatcaattacatgaagcaacttgaagagcgtttgaaagagcttgaagaagacatcaagaagagagatgca |
198 |
Q |
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| T |
45039379 |
gattgataaggttcatgtggtaacggaagctatcaattacatgaaacaacttgaagaacgtttgaaagagctagaagaagacattaagaagaaagatgca |
45039478 |
T |
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| Q |
199 |
ggatcattgagcagcataacaag |
221 |
Q |
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| T |
45039479 |
ggatcattgagcaccataacaag |
45039501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 45064923 - 45065054
Alignment:
| Q |
7 |
atattatattaaacctagatgaatgagtaaatttttatagtggttatcattggatagatgctatacaataaaaattatctaatggatgtgtagattgata |
106 |
Q |
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| T |
45064923 |
atattatattaaacctagatgaatgagtaattttttatagtagttatcattggatagatgctatacaataaaaattatctaaaggctatgtagattgata |
45065022 |
T |
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| Q |
107 |
aggttcatgtggtaacggaagctatcaattac |
138 |
Q |
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| T |
45065023 |
cggttcatgtggtaacggaagctatcaattac |
45065054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 45065330 - 45065413
Alignment:
| Q |
138 |
catgaagcaacttgaagagcgtttgaaagagcttgaagaagacatcaagaagagagatgcaggatcattgagcagcataacaag |
221 |
Q |
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| T |
45065330 |
catgaaacaacttgaagagcgtttgaaagagcttgaagaaaacattaagaagaaagatgcaggatcaatgagcaacataacaag |
45065413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 39 - 221
Target Start/End: Complemental strand, 45083269 - 45083089
Alignment:
| Q |
39 |
ttttatagtggttatcattggatagatgctatacaataaaaattatctaatggatgtgtagattgataaggttcatgtggtaacggaagctatcaattac |
138 |
Q |
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| T |
45083269 |
ttttatagtagttatcattggatagaagctataaaa--agacttatctaatggctgtgtagacggacaaggttcatgtactaggagaagctgtcaagtac |
45083172 |
T |
|
| Q |
139 |
atgaagcaacttgaagagcgtttgaaagagcttgaagaagacatcaagaagagagatgcaggatcattgagcagcataacaag |
221 |
Q |
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| T |
45083171 |
gtggcacaacttcaagaacgtgtgaaagagctagaagaagacatcaagaagaaaggtgcgggatcattgatcaccataacaag |
45083089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 48 - 221
Target Start/End: Original strand, 29377083 - 29377254
Alignment:
| Q |
48 |
ggttatcattggatagatgctatacaataaaaattatctaatggatgtgtagattgataaggttcatgtggtaacggaagctatcaattacatgaagcaa |
147 |
Q |
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|||||| |||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | || ||| |
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| T |
29377083 |
ggttataattggatagaagcta--caataaaaattatctaatggttgtgtagattgataaggttcatgtggtaacggaagctatcaattacgtaaaacaa |
29377180 |
T |
|
| Q |
148 |
cttgaagagcgtttgaaagagcttgaagaagacatcaagaagagagatgcaggatcattgagcagcataacaag |
221 |
Q |
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| T |
29377181 |
cttgaagaacgtgttaaagggctaggagaagatatcaaaaagaaagacacagggtcagtgagcaccataacaag |
29377254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 29375969 - 29376024
Alignment:
| Q |
1 |
tgtaatatattatattaaacctagatgaatgagtaaatttttatagtggttatcat |
56 |
Q |
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| T |
29375969 |
tgtaatatattatattaaaccaggacaaatgagtaaatttttatagtagttatcat |
29376024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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