View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14975_low_43 (Length: 208)
Name: NF14975_low_43
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14975_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 34 - 194
Target Start/End: Original strand, 37710184 - 37710344
Alignment:
| Q |
34 |
tgttgtttgttcttttcaatcttatgttaaacatatgttcaacatgtcttacaagccattcgggtttaccagtgaagaagaatacattatatccgaatag |
133 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37710184 |
tgttgtttgttcttttcaatcttatgtcaaacatatgttcaacatgtcttacaagccattcgggtttaccggtgaagaagaatacattatatccgaatag |
37710283 |
T |
|
| Q |
134 |
caacccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatcctgat |
194 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37710284 |
caacccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatcctgat |
37710344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 34 - 194
Target Start/End: Original strand, 37822581 - 37822741
Alignment:
| Q |
34 |
tgttgtttgttcttttcaatcttatgttaaacatatgttcaacatgtcttacaagccattcgggtttaccagtgaagaagaatacattatatccgaatag |
133 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37822581 |
tgttgttcgttcttttcaatcttatgtcaaacatatgttcaacatgtcttgcaagccattcgggtttaccagtgaagaagaatacattatatccgaatag |
37822680 |
T |
|
| Q |
134 |
caacccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatcctgat |
194 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37822681 |
caacccgaagattgccccacatgcatatccgattgctaccgctttccagccaaatcctgat |
37822741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 34 - 190
Target Start/End: Original strand, 37638423 - 37638579
Alignment:
| Q |
34 |
tgttgtttgttcttttcaatcttatgttaaacatatgttcaacatgtcttacaagccattcgggtttaccagtgaagaagaatacattatatccgaatag |
133 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37638423 |
tgttgttcgttcttttcaatcttatgtcaaacatatgttcaacatgtcttgcaagccattcgggtttaccagtgaagaagaatacattatatcccaatag |
37638522 |
T |
|
| Q |
134 |
caacccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatcc |
190 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37638523 |
caacccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatcc |
37638579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 36 - 194
Target Start/End: Complemental strand, 37394367 - 37394209
Alignment:
| Q |
36 |
ttgtttgttcttttcaatcttatgttaaacatatgttcaacatgtcttacaagccattcgggtttaccagtgaagaagaatacattatatccgaatagca |
135 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||| || |||| |
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| T |
37394367 |
ttgtttgatcttttcaatcttatgttaaacatattttcaacatgtcttgcaagccattggggttttccagtgaagaagaatacattatatcccaacagca |
37394268 |
T |
|
| Q |
136 |
acccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatcctgat |
194 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
37394267 |
acccatatattgccccacatccatatccgattgctaccgctttccagccaaatcctgat |
37394209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 36 - 194
Target Start/End: Original strand, 37434389 - 37434547
Alignment:
| Q |
36 |
ttgtttgttcttttcaatcttatgttaaacatatgttcaacatgtcttacaagccattcgggtttaccagtgaagaagaatacattatatccgaatagca |
135 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||| |||||| |||| | |||||||| |||||| |||||||||||||||||||||||||| || |||| |
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| T |
37434389 |
ttgtttgttcttttcattcttatgttaaacgtatgctcaacaagtctaagaagccattggggttttccagtgaagaagaatacattatatcccaacagca |
37434488 |
T |
|
| Q |
136 |
acccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatcctgat |
194 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| |||||| ||||||||||||||||||| |
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|
| T |
37434489 |
acccaaatattgccccacatccatatccgatcactaccgttttccagccaaatcctgat |
37434547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 34 - 194
Target Start/End: Original strand, 37531777 - 37531937
Alignment:
| Q |
34 |
tgttgtttgttcttttcaatcttatgttaaacatatgttcaacatgtcttacaagccattcgggtttaccagtgaagaagaatacattatatccgaatag |
133 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| | ||||||| ||| |||||||||| |||||||||||||||||||||||||||||||| || || |
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| T |
37531777 |
tgttgtttgttcttttcagtcttatgttaaacatgttttcaacaattctaacaagccattgaggtttaccagtgaagaagaatacattatatcccaagag |
37531876 |
T |
|
| Q |
134 |
caacccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatcctgat |
194 |
Q |
| |
|
|||||| |||||||||||||| ||||||| ||||| || ||||||||||||||||||||| |
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|
| T |
37531877 |
gaacccggatattgccccacatccatatccaattgccacagctttccagccaaatcctgat |
37531937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 34 - 194
Target Start/End: Original strand, 37695272 - 37695432
Alignment:
| Q |
34 |
tgttgtttgttcttttcaatcttatgttaaacatatgttcaacatgtcttacaagccattcgggtttaccagtgaagaagaatacattatatccgaatag |
133 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| | ||||||| ||| |||||||||| |||||||||||||||||||||||||||||||| || || |
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| T |
37695272 |
tgttgtttgttcttttcagtcttatgttaaacatgttttcaacaattctaacaagccattgaggtttaccagtgaagaagaatacattatatcccaagag |
37695371 |
T |
|
| Q |
134 |
caacccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatcctgat |
194 |
Q |
| |
|
|||||| |||||||||||||| ||||||| ||||| || ||||||||||||||||||||| |
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| T |
37695372 |
gaacccggatattgccccacatccatatccaattgccacagctttccagccaaatcctgat |
37695432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 190
Target Start/End: Complemental strand, 37402481 - 37402325
Alignment:
| Q |
34 |
tgttgtttgttcttttcaatcttatgttaaacatatgttcaacatgtcttacaagccattcgggtttaccagtgaagaagaatacattatatccgaatag |
133 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| | ||||||| ||| |||||||||| |||||||||||||||||||||||||||||||| || || |
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|
| T |
37402481 |
tgttgtttgttcttttcagtcttatgttaaacatgttttcaacaattctaacaagccattgaggtttaccagtgaagaagaatacattatatcccaagag |
37402382 |
T |
|
| Q |
134 |
caacccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatcc |
190 |
Q |
| |
|
|||||| |||||||||||||| ||||||| ||||| || ||||||||||||||||| |
|
|
| T |
37402381 |
gaacccggatattgccccacatccatatccaattgccacagctttccagccaaatcc |
37402325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 190
Target Start/End: Original strand, 37592881 - 37593037
Alignment:
| Q |
34 |
tgttgtttgttcttttcaatcttatgttaaacatatgttcaacatgtcttacaagccattcgggtttaccagtgaagaagaatacattatatccgaatag |
133 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| | ||||||| ||| |||||||||| |||||||||||||||||||||||||||||||| || || |
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| T |
37592881 |
tgttgtttgttcttttcagtcttatgttaaacatgttttcaacaattctaacaagccattgaggtttaccagtgaagaagaatacattatatcccaagag |
37592980 |
T |
|
| Q |
134 |
caacccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatcc |
190 |
Q |
| |
|
|||||| |||||||||||||| ||||||| ||||| || ||||||||||||||||| |
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|
| T |
37592981 |
gaacccggatattgccccacatccatatccaattgccacagctttccagccaaatcc |
37593037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 86 - 193
Target Start/End: Original strand, 37701418 - 37701525
Alignment:
| Q |
86 |
aagccattcgggtttaccagtgaagaagaatacattatatccgaatagcaacccgaatattgccccacatgcatatccgattgctaccgctttccagcca |
185 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37701418 |
aagccattgaggttttccagtgaagaagaatacattatatcccaagagcaacccgaatattgccccacatgcatatcctattgctaccgctttccagcca |
37701517 |
T |
|
| Q |
186 |
aatcctga |
193 |
Q |
| |
|
|||||||| |
|
|
| T |
37701518 |
aatcctga |
37701525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 36 - 194
Target Start/End: Original strand, 37439750 - 37439907
Alignment:
| Q |
36 |
ttgtttgttcttttcaatcttatgttaaacatatgttcaacatgtcttacaagccattcgggtttaccagtgaagaagaatacattatatccgaatagca |
135 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||| ||||| |||| | ||| ||||| ||||| |||||||||||||||| ||||||||| ||||||| |
|
|
| T |
37439750 |
ttgtttgttcttttcagtcttatgttaaatgtatgc-caacaagtctaagaagtcattcaggttttccagtgaagaagaatagattatatcccaatagca |
37439848 |
T |
|
| Q |
136 |
acccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatcctgat |
194 |
Q |
| |
|
|||||||||||||||||||| |||||||||| | || ||||||||||||||||||||| |
|
|
| T |
37439849 |
acccgaatattgccccacatccatatccgatcaccacagctttccagccaaatcctgat |
37439907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 37 - 194
Target Start/End: Original strand, 37427733 - 37427887
Alignment:
| Q |
37 |
tgtttgttcttttcaatcttatgttaaacatatgttcaacatgtcttacaagccattcgggtttaccagtgaagaagaatacattatatccgaatagcaa |
136 |
Q |
| |
|
|||||||||||||||||||||||||||| | || |||| | |||| |||| ||||| ||||| ||| | ||||| |||| ||||||| || | || |
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|
| T |
37427733 |
tgtttgttcttttcaatcttatgttaaatgtttgctcaaaaagtctaacaaaccattatggtttccca---atgaagagtacaatatatcccaagatcat |
37427829 |
T |
|
| Q |
137 |
cccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatcctgat |
194 |
Q |
| |
|
||| ||||||| |||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
37427830 |
cccaaatattgtcccacatgcatatcttattactaccgctttccagccaaatcctgat |
37427887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 3e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 34 - 194
Target Start/End: Complemental strand, 16844479 - 16844319
Alignment:
| Q |
34 |
tgttgtttgttcttttcaatcttatgttaaacatatgttcaacatgtcttacaagccattcgggtttaccagtgaagaagaatacattatatccgaatag |
133 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| |||| |||||| |||||||||||||||||||||||||| || || |
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|
| T |
16844479 |
tgttgattgttcttttcaatcttatgttaaacatacgttcaacatgtcttgcaaggcattggggttttccagtgaagaagaatacattatatcccaagag |
16844380 |
T |
|
| Q |
134 |
caacccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatcctgat |
194 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16844379 |
caacccgaatattgcaccacatgcatatccgattgttaccgctttccagccaaatcctgat |
16844319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 36 - 190
Target Start/End: Complemental strand, 24219209 - 24219058
Alignment:
| Q |
36 |
ttgtttgttcttttcaatcttatgttaaacatatgttcaacatgtcttacaagccattcgggtttaccagtgaagaagaatacattatatccgaatagca |
135 |
Q |
| |
|
|||||||| ||||||||||||||| |||| || ||||||||||||| ||||||||| ||||| ||||||||||| | || ||||||| || || | |
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|
| T |
24219209 |
ttgtttgtccttttcaatcttatgctaaatatgctttcaacatgtcttgcaagccattgaggtttcccagtgaagaaca---cactatatcccaagagga |
24219113 |
T |
|
| Q |
136 |
acccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatcc |
190 |
Q |
| |
|
|| | || |||||||||| ||||||| |||||||| ||||||||||||||||| |
|
|
| T |
24219112 |
ttccaagtactgccccacatccatatcctattgctactgctttccagccaaatcc |
24219058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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