View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14975_low_7 (Length: 471)
Name: NF14975_low_7
Description: NF14975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14975_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 5e-91; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 41605311 - 41605484
Alignment:
| Q |
18 |
actagctttaccttccttggtcttcttgtaatacttgtacaaattctcaaacttttctttgcatttctttccacttctttggtacccaaattcctcagcc |
117 |
Q |
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| T |
41605311 |
actagctttaccttccttggtcttcttgtaatacttgtacaaattctcaaacttttctttgcatttctttccacttctttggtacccaaattcctcagcc |
41605410 |
T |
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| Q |
118 |
attatcctaaacaagtagatcacaaagctattatattatatgttatacacatatacatcaacaaaatttgtagc |
191 |
Q |
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| T |
41605411 |
attatcctaaacaagtagatcacaaagctattatattatatgttatacacatatacatccacaaaatttgtagc |
41605484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 272 - 463
Target Start/End: Original strand, 41605566 - 41605757
Alignment:
| Q |
272 |
cagaacactactgcaatcatcgatattatatcaaccacatttattatagctttgtgcatatttgagttgtttaaataaatttagctatttaaaatgaaac |
371 |
Q |
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| T |
41605566 |
cagaacactactgcaatcatcgatattatatcaaccacatttattatagctttgtgcatatttgagttgtttaagtaaatttagctatttaaaatgaaac |
41605665 |
T |
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| Q |
372 |
aaatttattataattctctacaatattatnnnnnnntacaaccgcaacaacaatttaaaattgtcaacaaatctcttacaaaaccctttgct |
463 |
Q |
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| T |
41605666 |
aaatttattataattctctacaatattataaaaaaatacaaccgcaacaacaatttaaaattgtcaacaaatctcttacaaaaccctttgct |
41605757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 26599293 - 26599188
Alignment:
| Q |
22 |
gctttaccttccttggtcttcttgtaatacttgtacaaattctcaaacttttctttgcatttctttccacttctttggtacccaaattcctcagccatta |
121 |
Q |
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||||||||||| || |||||||||||||| ||||||| ||||||||| |||||| |||| || |||||||| ||||| || || ||| |||| ||||| |
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| T |
26599293 |
gctttaccttcttttgtcttcttgtaatatttgtacagattctcaaatttttctctgcacttttttccactcctttgatatgcatgttcttcagacatta |
26599194 |
T |
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| Q |
122 |
tcctaa |
127 |
Q |
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|||||| |
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| T |
26599193 |
tcctaa |
26599188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 44554560 - 44554625
Alignment:
| Q |
41 |
tcttgtaatacttgtacaaattctcaaacttttctttgcatttctttccacttctttggtacccaa |
106 |
Q |
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|||||| |||||| || | |||||||||||| ||||||||||||||| |||||| |||||||||| |
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| T |
44554560 |
tcttgtgatacttataaacattctcaaacttctctttgcatttctttgaacttctgtggtacccaa |
44554625 |
T |
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