View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14976_high_14 (Length: 258)
Name: NF14976_high_14
Description: NF14976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14976_high_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 7 - 256
Target Start/End: Original strand, 73109 - 73358
Alignment:
| Q |
7 |
tcatcttcatcttcatcttcggtgctgaagcgtagtccttctactacttgtgtatttgtttgtgtctctaaatcctccaaatccaaatccaacggtggtg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
73109 |
tcatcttcatcttcatcttcggtgctgaagcgtagtccttctactacttgtgtatttgtttgtgtctctaaatcctccaaatccaaatcaaacggtggtg |
73208 |
T |
|
| Q |
107 |
aaattgataaatcgataaaaggatcaggaaccaccgctagaggtcggagattgcttaaaattagacaagataaacaagaacgcgaacaagaacgcgttca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
73209 |
aaattgataaatcgataaaaggatcaggaaccaccgctagaggtcggagattgcttaaaattagacaagataaacaacaacgcgaacaagaacgcgttca |
73308 |
T |
|
| Q |
207 |
caatttccctgcttgggctaagtaactaactaacttctttcctttcctat |
256 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
73309 |
caattaccctgcttgggctaagtaactaactaacttctttcctttcctat |
73358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University