View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14976_high_3 (Length: 490)
Name: NF14976_high_3
Description: NF14976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14976_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 10 - 474
Target Start/End: Complemental strand, 46017336 - 46016872
Alignment:
| Q |
10 |
attattctcatatcaatcatatatgtcatatgcatatatggaaaataatggttattttcatatgcagaaatgatattgaaacgaatatcaatgtctttag |
109 |
Q |
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| T |
46017336 |
attattctcatatcaatcatatatgtcatatgcatatatggaaaataatggttattttcatatgcagaaatgatattgaaacgaatatcaatgtctttag |
46017237 |
T |
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| Q |
110 |
aagatttttgtcatgaagctaaaattgtaggtaactaaattttcatggttagctagttagcatcattgtatgattggaatggagtctaccaagaagaaga |
209 |
Q |
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| T |
46017236 |
aagatttttgtcatgaagctaaaattgtaggtaactaaattttcatggtttgctagttagcatcattgtatgattggaatggagtctaccaagaagaaga |
46017137 |
T |
|
| Q |
210 |
aaaagaaaacgacaaccgtactcaaaatggctatgcaacactgtcaagtactactaagtagtggtgggacaaaccttttatatcatcaaatnnnnnnntt |
309 |
Q |
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| T |
46017136 |
aaaagaaaacgacaaccgtactcaaaatggctatgcaacactgtcaagtactactaagtagtggtgggacaaacctttcatatcatcaaatcaaaaaatt |
46017037 |
T |
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| Q |
310 |
tgcattgcatttcgttctcataaaaaataaatcactgctttcttgcaattaaaattgtcaggtaccaagtactgtattaaatctaagtgactcaagtatc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46017036 |
tgcattgcatttcgttctcataaaaaataaatcactgctttcttgcaattaaaattgtcaggtaccaagtactgtattaaatctaagtgactcaagtatc |
46016937 |
T |
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| Q |
410 |
agactgcacctgtaaccataatacccttactttataatagcagagatttagaaagagtagttatt |
474 |
Q |
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| T |
46016936 |
agactgcacctgtaaccataatacccttactttataatagcagagatttagaaagagtagttatt |
46016872 |
T |
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