View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14976_high_8 (Length: 336)
Name: NF14976_high_8
Description: NF14976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14976_high_8 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 7423364 - 7423046
Alignment:
| Q |
18 |
tctacagttacagttgaatgggcaatctccgagcttgtgaaaaagccagagattatcaagagagctacggaggaactagacaaagtaataggaagagata |
117 |
Q |
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| T |
7423364 |
tctacagtaacagtagaatgggcaatctccgagcttgtgaaaaagccagagattatcaagagagctacggaggaactagacaaagtaataggaagagata |
7423265 |
T |
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| Q |
118 |
gatgggttgaagagaaagacattgtcaatttaccttatgtttttgcaattgctaaagaaacaatgaggcttcatcctgcagcaccattgttagtgccaag |
217 |
Q |
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| T |
7423264 |
gatgggttgaagagaaagacattgtcaatttaccttatgtttttgcaattgctaaagaaacaatgaggcttcatcctgcagcaccattgttagtgccaag |
7423165 |
T |
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| Q |
218 |
agaagctagtgaggattgcaatgttgatggttatgatatcccaaaagggactctaattcttgtcaatacttggacaattggaagagatcctaatgtttgg |
317 |
Q |
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| T |
7423164 |
agaagctagtgaggattgcaatgttgatggttatgatatcccaaaagggactctaattcttgtcaatacttggacaattggaagagatcctaatgtttgg |
7423065 |
T |
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| Q |
318 |
gacaatccatatgagttta |
336 |
Q |
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| T |
7423064 |
gacaatccatatgagttta |
7423046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 33 - 336
Target Start/End: Complemental strand, 7429758 - 7429455
Alignment:
| Q |
33 |
gaatgggcaatctccgagcttgtgaaaaagccagagattatcaagagagctacggaggaactagacaaagtaataggaagagatagatgggttgaagaga |
132 |
Q |
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| T |
7429758 |
gaatgggcaatttctgagcttgtgaaaaggccagagattatcaagagagctacagaggaactagatagagtaatagggagagatagatgggttgaagaga |
7429659 |
T |
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| Q |
133 |
aagacattgtcaatttaccttatgtttttgcaattgctaaagaaacaatgaggcttcatcctgcagcaccattgttagtgccaagagaagctagtgagga |
232 |
Q |
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| T |
7429658 |
aagacattgtcaatttaccttatgtttttgcaattgctaaagaaacaatgaggcttcatcctgtgacaccaatgttagtgccaagagaagctactgagaa |
7429559 |
T |
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| Q |
233 |
ttgcaatgttgatggttatgatatcccaaaagggactctaattcttgtcaatacttggacaattggaagagatcctaatgtttgggacaatccatatgag |
332 |
Q |
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| T |
7429558 |
ttgcaatgttgatggttatgatataccaaaagggactatgattcttgtcaatacttggacaattggaagagattctgatagttgggataatccatatgaa |
7429459 |
T |
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| Q |
333 |
ttta |
336 |
Q |
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|||| |
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| T |
7429458 |
ttta |
7429455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 22 - 336
Target Start/End: Complemental strand, 7415701 - 7415387
Alignment:
| Q |
22 |
cagttacagttgaatgggcaatctccgagcttgtgaaaaagccagagattatcaagagagctacggaggaactagacaaagtaataggaagagatagatg |
121 |
Q |
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|||| ||||| |||||||||||||||||||| || | ||| |||||||| |||||| ||| || ||||| ||||| | ||| ||||||| ||||||||| |
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| T |
7415701 |
cagtaacagtagaatgggcaatctccgagctggttagaaaaccagagatcttcaagaaagcaaccgaggagctagatagagtgataggaaaagatagatg |
7415602 |
T |
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| Q |
122 |
ggttgaagagaaagacattgtcaatttaccttatgtttttgcaattgctaaagaaacaatgaggcttcatcctgcagcaccattgttagtgccaagagaa |
221 |
Q |
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| T |
7415601 |
ggttgaagagaaagacattgcgaatttaccttatgtttacgcaattgctaaagaaacaatgaggctacatcccgtggcaccatttttagtgccacgagaa |
7415502 |
T |
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| Q |
222 |
gctagtgaggattgcaatgttgatggttatgatatcccaaaagggactctaattcttgtcaatacttggacaattggaagagatcctaatgtttgggaca |
321 |
Q |
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| T |
7415501 |
gctagagaggattgcaaagttgatggttacgatattcccaaagggactatagttcttgtcaatacttggacaattgcaagagattctgaggtttgggaga |
7415402 |
T |
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| Q |
322 |
atccatatgagttta |
336 |
Q |
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|||||||||| |||| |
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| T |
7415401 |
atccatatgaattta |
7415387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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