View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14976_high_9 (Length: 300)
Name: NF14976_high_9
Description: NF14976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14976_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 283
Target Start/End: Complemental strand, 7423040 - 7422770
Alignment:
| Q |
13 |
gagaggtttattggtaataatatagatgtaaaaggacatgattatgagttgttgccatttggtactggtagaaggatgtgtcctggttatcctcttggtc |
112 |
Q |
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| T |
7423040 |
gagaggtttattggtaataatatagatgtaaaaggacatgattatgagttgttgccatttggtactggtagaaggatgtgtcctggttatcctcttggtc |
7422941 |
T |
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| Q |
113 |
ttaaggtgatacaatcaagtttggctaatttgttgcatggatttaattggagattacctaataatgtgaaaaaagaggatttgaatatggaggagatttt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||| |
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| T |
7422940 |
ttaaggtgatacaatcaagtttggctaatttgttgcatggatttaattggagattacctaatgatatgaagaaagaggatttgaatatggaggagatttt |
7422841 |
T |
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| Q |
213 |
tgggctcaccacacctaggaaaataccactagaagttgttcttgagcctagacttcctcatcatctttact |
283 |
Q |
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| T |
7422840 |
tgggctgactactcctaggaaaataccactagaagttgttgtggagcctagacttcctcatcatctttact |
7422770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 13 - 283
Target Start/End: Complemental strand, 7415381 - 7415111
Alignment:
| Q |
13 |
gagaggtttattggtaataatatagatgtaaaaggacatgattatgagttgttgccatttggtactggtagaaggatgtgtcctggttatcctcttggtc |
112 |
Q |
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| T |
7415381 |
gagaggtttcttggtaaagatatagatgtaaaaggacatgattttgagttgttaccatttggtgctggtagaaggatgtgtcctggttaccctcttggta |
7415282 |
T |
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| Q |
113 |
ttaaggtgatacaatcaagtttggctaatttgttgcatggatttaattggagattacctaataatgtgaaaaaagaggatttgaatatggaggagatttt |
212 |
Q |
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| T |
7415281 |
ttaaggtgattcaaacaagtttggctaatttgttgcatggatttaattggacattacctaataatgtgaaaaaggaggatttgaatatggaggagatttt |
7415182 |
T |
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| Q |
213 |
tgggctcaccacacctaggaaaataccactagaagttgttcttgagcctagacttcctcatcatctttact |
283 |
Q |
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| T |
7415181 |
tgggctttctacacctaagaaaataccattagaaattgttgtggagcctagacttgctgatcatctttact |
7415111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 41 - 281
Target Start/End: Complemental strand, 7429418 - 7429178
Alignment:
| Q |
41 |
taaaaggacatgattatgagttgttgccatttggtactggtagaaggatgtgtcctggttatcctcttggtcttaaggtgatacaatcaagtttggctaa |
140 |
Q |
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| T |
7429418 |
taaaaggacatgattataagatgttgccattaggtgctggtagaaggatgtgtcctggttatcctcttggtcttaaggtggttcaatcaagtttggctaa |
7429319 |
T |
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| Q |
141 |
tttgttgcatggatttaattggagattacctaataatgtgaaaaaagaggatttgaatatggaggagatttttgggctcaccacacctaggaaaatacca |
240 |
Q |
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| T |
7429318 |
cttgttgcatggatttaattggagattacctaatgatatgaaaaaagaggatttaaatatggaggagatttttgggctcactacacctaagaaaatacca |
7429219 |
T |
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| Q |
241 |
ctagaagttgttcttgagcctagacttcctcatcatcttta |
281 |
Q |
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||||||||||| | ||||||| |||||| |||||||||| |
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| T |
7429218 |
ttagaagttgttttggagcctaaacttccgtatcatcttta |
7429178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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