View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14976_low_10 (Length: 366)
Name: NF14976_low_10
Description: NF14976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14976_low_10 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 22633972 - 22633617
Alignment:
| Q |
11 |
tagcatagggcaagttacagtcggttgtctaaactcactgtataaaagtgtggcagatctggatgaaggttgtttctctaacgatacaatcaaacaaatg |
110 |
Q |
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| T |
22633972 |
tagcatagggcaagttacagtcggttgtctaaactcgctgtataaaagtgtggcagatctggatgaaggttgtgtctctaacgagacaatcaaacaaatg |
22633873 |
T |
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| Q |
111 |
cttctacaaccaatcaactcagcggaagattattgtaacactcttaaaatcaacattgacgacactcaaccaacaaagtacttcacatgtgccgcctact |
210 |
Q |
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| T |
22633872 |
cttctacaaccaatcaactcagcggaagattattgtaacactcttaaaatcaacattgacgacactcaaccaacaaagtacttcacatgtgccacctact |
22633773 |
T |
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| Q |
211 |
tgattggctgcttatatcgtaatattaccaactcaacctataaagataaacataaatgtcactgtgggaattcttttacccatccaattatccttacacg |
310 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22633772 |
ctattggctgcttatatcgtaatattaccaactcaacgtataaagataaacataaatgtcactgtgggaattcttttacccatccaattatccttacacg |
22633673 |
T |
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| Q |
311 |
tctcccccaaggatttgttaatggtgtagctacatttgtcataactgatgatctca |
366 |
Q |
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| T |
22633672 |
tctcccccaaggatttgttaatgatgtagctacttttgtcataactgatgatctca |
22633617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 22625162 - 22625351
Alignment:
| Q |
11 |
tagcatagggcaagttacagtcggttgtctaaactcactgtataaaagtgtggcagatctggatgaaggttgtttctctaacgatacaatcaaacaaatg |
110 |
Q |
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| T |
22625162 |
tagcatagggcaagttacagttggttgtctaaactctctctatggaagtgttgcaaatctggatgaaggttgtttctcaactaagacaaccaaacaaatg |
22625261 |
T |
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| Q |
111 |
cttctacaaccaatcaactcagcggaagattattgtaacactcttaaaatcaacattgacgacactcaaccaacaaagtacttcacatgt |
200 |
Q |
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| T |
22625262 |
ttgctgcagccaataaactcagctgaagattattgcaacactcttaaactcaacattgatgacactcaaccaacaaagtacttcgcatgt |
22625351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 251 - 366
Target Start/End: Original strand, 22625438 - 22625553
Alignment:
| Q |
251 |
taaagataaacataaatgtcactgtgggaattcttttacccatccaattatccttacacgtctcccccaaggatttgttaatggtgtagctacatttgtc |
350 |
Q |
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| T |
22625438 |
taaagataatcttaagtgtcgttgtgggaattattttacccgtccagttttacttaaacatctcccccaaggatttgttaatggtgtagctacatttgtc |
22625537 |
T |
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| Q |
351 |
ataactgatgatctca |
366 |
Q |
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| T |
22625538 |
ataactgatgatctca |
22625553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 96 - 366
Target Start/End: Original strand, 22622971 - 22623238
Alignment:
| Q |
96 |
acaatcaaacaaatgcttctacaaccaatcaactcagcggaagattattgtaacactcttaaaatcaacattgacgacactcaaccaacaaagtacttca |
195 |
Q |
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|||| |||||||||| | || ||||| || |||| || ||||||||||| |||||||||||| | ||||| || ||||||||||||||||||| | || |
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| T |
22622971 |
acaaccaaacaaatgttgctgcaacctattaacttcgcagaagattattgcaacactcttaaacttaacatcgatgacactcaaccaacaaagttcctcg |
22623070 |
T |
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| Q |
196 |
catgtgccgcctacttgattggctgcttatatcgtaatattaccaactcaacctataaagataaacataaatgtcactgtgggaattcttttacccatcc |
295 |
Q |
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| T |
22623071 |
tgtgtacca---actttaatggctgctactatcgcgatatgaccacatcgacatataaagataaatataaatgtcgatgtggtcattcttttacagttca |
22623167 |
T |
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| Q |
296 |
aattatccttacacgtctcccccaaggatttgttaatggtgtagctacatttgtcataactgatgatctca |
366 |
Q |
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|||| |||||| || | ||| |||||||||||||| ||||||| |||| |||||||||||||||||||||| |
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| T |
22623168 |
aattttccttaaacatatccgccaaggatttgttactggtgtaactacttttgtcataactgatgatctca |
22623238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 177
Target Start/End: Original strand, 23365710 - 23365876
Alignment:
| Q |
11 |
tagcatagggcaagttacagtcggttgtctaaactcactgtataaaagtgtggcagatctggatgaaggttgtttctctaacgatacaatcaaacaaatg |
110 |
Q |
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||||||||||| |||||| || ||||||||||||||||| ||| |||||||| ||||| ||||||| |||| | || ||||||||||||||||| |
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| T |
23365710 |
tagcatagggccagttaccgttggttgtctaaactcactctatcgaagtgtggttgatcttgatgaagattgtatgagtagtcatacaatcaaacaaatg |
23365809 |
T |
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| Q |
111 |
cttctacaaccaatcaactcagcggaagattattgtaacactcttaaaatcaacattgacgacactc |
177 |
Q |
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| T |
23365810 |
ctgcttaaaccaactaactttgcagaagattattgcaacactcttgaacttaacatcgaagacactc |
23365876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 3734014 - 3733970
Alignment:
| Q |
322 |
gatttgttaatggtgtagctacatttgtcataactgatgatctca |
366 |
Q |
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| T |
3734014 |
gatttcttaatggtgtagctacttttgtcataacggacgatctca |
3733970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 23336035 - 23335955
Alignment:
| Q |
120 |
ccaatcaactcagcggaagattattgtaacactcttaaaatcaacattgacgacactcaaccaacaaagtacttcacatgt |
200 |
Q |
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|||| ||||| ||| |||| |||||||| ||||||||| | |||||||||||| | | |||||||||||||||| |||| |
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| T |
23336035 |
ccaaccaacttagcagaaggttattgtagaactcttaaacttaacattgacgactcaaatccaacaaagtacttcatatgt |
23335955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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