View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14976_low_16 (Length: 259)
Name: NF14976_low_16
Description: NF14976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14976_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 23095158 - 23095394
Alignment:
| Q |
18 |
acaactaaagacaagtgaccaaaaatcacatgtttaggaggagattcacctgtcaatatgtaattcaaaccttctggagatgatgtatctgcaacttctg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23095158 |
acaactaaagacaagtgaccaaaaatcacatgtttaggaggagattcacctgtcaatatgtaattcaaaccttctggagatgatgtatctgcaacttctg |
23095257 |
T |
|
| Q |
118 |
caatcctattgagatccctttgaagtgagcgacccgtccctaacaaaccaacctataagaacaacactaacattgagaatttgaaattcaccaaagatgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
23095258 |
caatcctattgagatccctttgaagtgagcgacccgtccctaacaaaccaacctataagaacaacactaacattgagaatttgaaattcaccaaagattc |
23095357 |
T |
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| Q |
218 |
aaaatagtgaataaaatgaaatgactatgatgtgcag |
254 |
Q |
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| T |
23095358 |
aaaatagtgaataaaatgaaatgactatgatgtgcag |
23095394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 11827224 - 11827460
Alignment:
| Q |
18 |
acaactaaagacaagtgaccaaaaatcacatgtttaggaggagattcacctgtcaatatgtaattcaaaccttctggagatgatgtatctgcaacttctg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11827224 |
acaactaaagacaagtgaccaaaaatcacatgtttaggaggagattcacctgtcaatatgtaattcaaaccttctggagatgatgtatctgcaacttctg |
11827323 |
T |
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| Q |
118 |
caatcctattgagatccctttgaagtgagcgacccgtccctaacaaaccaacctataagaacaacactaacattgagaatttgaaattcaccaaagatgc |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11827324 |
caatcctattgagatccctttgaagtgagcgaaccgtccccaacaaaccaacctataagaacaacactaacattgagaatttgaaattcaccaaagattc |
11827423 |
T |
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| Q |
218 |
aaaatagtgaataaaatgaaatgactatgatgtgcag |
254 |
Q |
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| T |
11827424 |
aaaatagtgaataaaatgaaatgactatgatgtgcag |
11827460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 47346019 - 47345796
Alignment:
| Q |
18 |
acaactaaagacaagtgaccaaaaatcacatgtttaggaggagattcacctgtcaatatgtaattcaaaccttctggagatgatgtatctgcaacttctg |
117 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47346019 |
acaaccaaagacaagtgaccaaaaatcacatgtttaggaac---ttcacctgtcaatatataattcaaaccttctggagatgatgtatctgcaacttctg |
47345923 |
T |
|
| Q |
118 |
caatcctattgagatccctttgaagtgagcgacccgtccctaacaaaccaacctataagaacaacactaacattgagaatttgaaatt-caccaaagatg |
216 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| | |||||||||||||||| |||||||||| |
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| T |
47345922 |
caatcctattgagatccctttgaagtgagcgacccatccccaacaaaccaacctacaagaacaacactatcgttgagaatttgaaattccaccaaagatt |
47345823 |
T |
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| Q |
217 |
caaaatagtgaataaaatgaaatgact |
243 |
Q |
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||||||||||||||||||||||||||| |
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| T |
47345822 |
caaaatagtgaataaaatgaaatgact |
47345796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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