View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14976_low_2 (Length: 627)
Name: NF14976_low_2
Description: NF14976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14976_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 1 - 602
Target Start/End: Complemental strand, 52320137 - 52319533
Alignment:
| Q |
1 |
tggaaacttattagtagtaataatt----ttgaatgaatgaaaaacttattaattaattaattgtttatgaagaagaagnnnnnnntactccataatgaa |
96 |
Q |
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| T |
52320137 |
tggaaacttattagtagtaataattaattttgaatgaatgaaaaacttattaattaattaattgtttatgaagaaaaa--caaaaatactccataatgaa |
52320040 |
T |
|
| Q |
97 |
aacacaaacaaggaaagcaataatgtctgttgttttaagaacctgcgccaccaaggaaataggtcttggtggaatccggaggtgtcaccgtcg---ggaa |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52320039 |
aacacaaacaaggaaagcaataatgtctgttgttttaagaacctgcgccaccaaggaaataggtcttggtggaatccggaggtgtcaccgtcgctgggaa |
52319940 |
T |
|
| Q |
194 |
ttcaaggaactcaacattcactaataatatagttttaatagcagaaccggtttaaaactggttcaaataaactaaaccgatttaaaactataaaccggtt |
293 |
Q |
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| T |
52319939 |
ttcaaggaactcaacattcactaataatatagttttaatagcagaaccggtttaaaactggttcaaataaactaaaccgatttaaaactataaaccggtt |
52319840 |
T |
|
| Q |
294 |
ttaaactggttcagaactgaaccgcaactagtttgagaaactaaccaatttttattaaagttgtttttaaaaactaatccaatctattaatctggttcag |
393 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52319839 |
ttaaactggttcagaactgaactgcaactagtttgagaaactaaccaatttttattaaagttgtttttaaaaactaaaccaatctattaatctggttcag |
52319740 |
T |
|
| Q |
394 |
ttcaatatatggaccgcgaacacccctacttcttgtggggaaatgacaacaactaagttcaatctagagaagttaaatggcaagaatgatcttcgtctat |
493 |
Q |
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| T |
52319739 |
ttcaatatatggaccgcgaacacccctacttct--tggggaaatgacaacaactaagttcaatctagagaagttcaatggcaagaatgattttcgtctat |
52319642 |
T |
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| Q |
494 |
ggcgactcaagacgaaactcatatagttcataaaggtttagcaggtgttttacttggagaaaagaatttaccaactacattttcttatttgaataaaaaa |
593 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52319641 |
ggcgactcaagacgaaactcatatagttcataaaggtttagcaggtgttttacttggagaaaagaatttaccaactacattttcttatttgaataaaaaa |
52319542 |
T |
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| Q |
594 |
gaaatcatg |
602 |
Q |
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||||||||| |
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| T |
52319541 |
gaaatcatg |
52319533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 368
Target Start/End: Complemental strand, 5106739 - 5106655
Alignment:
| Q |
284 |
taaaccggttttaaactggttcagaactgaaccgcaactagtttgagaaactaaccaatttttattaaagttgtttttaaaaact |
368 |
Q |
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| T |
5106739 |
taaaccggttatgaactggttctgaaccaaactgaaattagtttgaaaaattaaccaatttttattaaagtggtttttaagaact |
5106655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 44198453 - 44198497
Alignment:
| Q |
324 |
gtttgagaaactaaccaatttttattaaagttgtttttaaaaact |
368 |
Q |
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| T |
44198453 |
gtttgaaaaattaaccaatttttattaaaatggtttttaaaaact |
44198497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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