View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14976_low_21 (Length: 212)
Name: NF14976_low_21
Description: NF14976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14976_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 35207804 - 35208004
Alignment:
| Q |
1 |
tcaatattgttacttaagcacagtctatcacagactagtgagtgccggaaggagagtcgatccttcttccattttcattacatcatgac---agagtgac |
97 |
Q |
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| T |
35207804 |
tcaatattgttacttaagcacagtctatcacagactagtgcctgccggaaggagagtcgatccttcttccattttcattacatcatgacgacagagtgac |
35207903 |
T |
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| Q |
98 |
aacaatattgattaaattggaaacaatgccttaagtagacaaatcaataaatggcagcaaattcatattgcatcaaactatattaaatatatagttcaaa |
197 |
Q |
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| T |
35207904 |
aacaatattgattaaattggaaacaatgccttaactagacaaatcaataaatggcagcaaattcatattgcatcaaactatattaaatatatagttcaaa |
35208003 |
T |
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| Q |
198 |
c |
198 |
Q |
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| T |
35208004 |
c |
35208004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 35189926 - 35189994
Alignment:
| Q |
1 |
tcaatattgttacttaagcacagtctatcacagactagtgagtgccggaaggagagtcgatccttcttc |
69 |
Q |
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| T |
35189926 |
tcaatactgttactcaagcacgatctatcacaaactagtgagtgctggaaggagagccaatccttcttc |
35189994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 35215895 - 35215963
Alignment:
| Q |
1 |
tcaatattgttacttaagcacagtctatcacagactagtgagtgccggaaggagagtcgatccttcttc |
69 |
Q |
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| T |
35215895 |
tcaatattgttactcaagcacattctatcacagactagtgaatgcggaatggagtgtcggtccttcttc |
35215963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 35199679 - 35199724
Alignment:
| Q |
137 |
caaatcaataaatggcagcaaattcatattgcatcaaactatatta |
182 |
Q |
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| T |
35199679 |
caaatcaataatttgcagcaaattcatattgcatcaaagtatatta |
35199724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 172
Target Start/End: Original strand, 35147172 - 35147207
Alignment:
| Q |
137 |
caaatcaataaatggcagcaaattcatattgcatca |
172 |
Q |
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| T |
35147172 |
caaatcaataaatggcagcaaattcgtattgcatca |
35147207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 35199472 - 35199545
Alignment:
| Q |
1 |
tcaatattgttacttaagcacagtct--atcacagac---tagtgagtgccggaaggagagtcgatccttcttc |
69 |
Q |
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| T |
35199472 |
tcaatattgttactcaagcacagtgtccatcacagaccagtagtgagtactggaaggagagtcaatccttcttc |
35199545 |
T |
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