View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14976_low_23 (Length: 211)
Name: NF14976_low_23
Description: NF14976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14976_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 6 - 197
Target Start/End: Original strand, 54544291 - 54544482
Alignment:
| Q |
6 |
tcataggcatcaccttcatcaaccgtacacagtggagagatccactaaattttggcaacnnnnnnnnnnncgctactgcattaccaactctcaaacacat |
105 |
Q |
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| T |
54544291 |
tcataggcatcaccttcatcaaccgtacacagtggagagatccactaaattttggcaacaaaaaaaaaatgtctactgcattaccaactctcaaacacat |
54544390 |
T |
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| Q |
106 |
aggttacattcagacaattatgatgagtaaaaaatgaagcatcagatattactcggctagtatgtaccgtcttacacacatcaatattcacc |
197 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54544391 |
gagttacattcacacaattatgatgagtaaaaaatgaagcatcagatattactcggctagtatgtaccgtcttacacacatcaatattcacc |
54544482 |
T |
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