View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14976_low_5 (Length: 451)
Name: NF14976_low_5
Description: NF14976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14976_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 13 - 434
Target Start/End: Original strand, 33902977 - 33903395
Alignment:
| Q |
13 |
aaaatatttagcgggactaaccaagtaattggactcaaatagtcaataagctcctctaggacgaatcattcaggaaaactcgaattcgatttttgctggc |
112 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33902977 |
aaaatatttagctggactaaccaagtaattggactcaaatagtcaataagctcctctaggacgaatcattcaggaaaactcgaatttgatttttgctggc |
33903076 |
T |
|
| Q |
113 |
aacaatttttggtcagactttatttatccgagttcaaaataatttgcaataattgcaaaaactaaaatcatatttaaaccttcannnnnnnnnnatatat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33903077 |
aacaatttttggtcagactttatttatccgagttcaaaataatttgcaataattgcaaaaactaaaatcatatttaaaccttcattttttt---atatat |
33903173 |
T |
|
| Q |
213 |
taaaattgaacaaaatttacttagacttcaaataattaaattttgtagggaccaaaaatatattaatcctatataatctttagacaatcatgtgatagtt |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
33903174 |
taaaattgaacaaaatttacttagacttcaaataattaaaatttgtagggaccaaaaatatattaaccctatataatctttagacaatcttgtgatagtt |
33903273 |
T |
|
| Q |
313 |
atttgacatacttggtggcagaattctggatacacagtaggaatggtaggagatggtatcaatgattcaccagcactagtagcagctgatgttggaatgg |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33903274 |
atttgacatacttggtggcagaattctggatacacagtaggaatggtaggagatggtatcaatgattcaccagcactagtagcagctgatgttggaatgg |
33903373 |
T |
|
| Q |
413 |
caattggtgctggaacagacat |
434 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
33903374 |
caattggtgctggaacagacat |
33903395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 13 - 434
Target Start/End: Original strand, 33919967 - 33920385
Alignment:
| Q |
13 |
aaaatatttagcgggactaaccaagtaattggactcaaatagtcaataagctcctctaggacgaatcattcaggaaaactcgaattcgatttttgctggc |
112 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33919967 |
aaaatatttagcgggactaaccaagtaatttgactcaaatagtcaataagctcctctaggacgaatcattcaggaaaactcgaatttgatttttgctggc |
33920066 |
T |
|
| Q |
113 |
aacaatttttggtcagactttatttatccgagttcaaaataatttgcaataattgcaaaaactaaaatcatatttaaaccttcannnnnnnnnnatatat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
33920067 |
aacaatttttggtcagactttatttatccgagttcaaaataatttgcaataattgcaaaaactaaaatcatatttaa-ccttcatttttttt--atatat |
33920163 |
T |
|
| Q |
213 |
taaaattgaacaaaatttacttagacttcaaataattaaattttgtagggaccaaaaatatattaatcctatataatctttagacaatcatgtgatagtt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33920164 |
taaaattgaacaaaatttacttagacttcaaataattaaaatttgtagggaccaaaaatatattaaccctatataatctttagacaatcatgtgatagtt |
33920263 |
T |
|
| Q |
313 |
atttgacatacttggtggcagaattctggatacacagtaggaatggtaggagatggtatcaatgattcaccagcactagtagcagctgatgttggaatgg |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33920264 |
atttgacatacttggtggcagaattctggatacacagtaggaatggtaggagatggtataaatgattcaccagcactagtagcagctgatgttggaatgg |
33920363 |
T |
|
| Q |
413 |
caattggtgctggaacagacat |
434 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
33920364 |
caattggtgctggaacagacat |
33920385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 336 - 434
Target Start/End: Complemental strand, 2774573 - 2774475
Alignment:
| Q |
336 |
ttctggatacacagtaggaatggtaggagatggtatcaatgattcaccagcactagtagcagctgatgttggaatggcaattggtgctggaacagacat |
434 |
Q |
| |
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|||||||||||| || | ||||| || || |||||||||||||| || ||||| |||||||| || || ||||||||||| |||||||| |||||||| |
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| T |
2774573 |
ttctggatacacggtggctatggtgggggacggtatcaatgattcgcctgcacttgtagcagcagacgtgggaatggcaataggtgctggcacagacat |
2774475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 428
Target Start/End: Original strand, 15211722 - 15211796
Alignment:
| Q |
354 |
aatggtaggagatggtatcaatgattcaccagcactagtagcagctgatgttggaatggcaattggtgctggaac |
428 |
Q |
| |
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|||||| || ||||| ||||| ||||| |||||| ||| || ||||||||||| ||||||||||| |||||||| |
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| T |
15211722 |
aatggtgggcgatggcatcaacgattctccagcattagctgctgctgatgttggcatggcaattggggctggaac |
15211796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 43881144 - 43881112
Alignment:
| Q |
161 |
ataattgcaaaaactaaaatcatatttaaacct |
193 |
Q |
| |
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|||||||||| |||||||||||||||||||||| |
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| T |
43881144 |
ataattgcaagaactaaaatcatatttaaacct |
43881112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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