View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14976_low_6 (Length: 450)
Name: NF14976_low_6
Description: NF14976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14976_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 11 - 421
Target Start/End: Complemental strand, 23701286 - 23700874
Alignment:
| Q |
11 |
tcttcttctcagttgaaacaatcctattgtgatatctgcatggaagctaaacctgttgaagaaatgttccaaaaccgaaaatgttcacactctttctgtg |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23701286 |
tcttcttctcagttgaaacaatcctattgtgatatctgtatggaagctaaacctgttgaagaaatgttccaaaaccgaaaatgttcacactctttctgtg |
23701187 |
T |
|
| Q |
111 |
aatattgtgttggaagatatctagctgcaaaaattaa--agagagtatatcaatggtaaaatgtcctgatccaaaatgcaatgatattttggagcctcat |
208 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23701186 |
aatattgtgttggaagatatctagctgcaaaaattcacaagagagtatatcaatggtaaaatgtcctgatccaaaatgcaatgatattttggagcctcat |
23701087 |
T |
|
| Q |
209 |
gattgtagttcaattttagcaaaggatgtgtttgatagatgggaaaatgcactttgtgagaatatggtgttaggttcacagaaattttattgtcctttta |
308 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23701086 |
gattgttgttcaattttaccaaaggatgtgtttgatagatgggaaaattcactttgtgagaatatggtgttaggttcacagaaattttattgtcctttta |
23700987 |
T |
|
| Q |
309 |
atgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtcatagattgttctgtgcacaatgtaaggtttc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23700986 |
atgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtcatagattgttctgtgcacaatgtaaggtttc |
23700887 |
T |
|
| Q |
409 |
atggcacgcaggt |
421 |
Q |
| |
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||||||| ||||| |
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| T |
23700886 |
atggcacacaggt |
23700874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 5 - 415
Target Start/End: Original strand, 23694511 - 23694921
Alignment:
| Q |
5 |
tcttcgtcttcttctcagttgaaacaatcctattgtgatatctgcatggaagctaaacctgttgaagaaatgttccaaaaccgaaaatgttcacactctt |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| ||| || |||||||||||||| ||||||||||||||||| |||| |||||||||||| |||| |
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| T |
23694511 |
tcttcgtcttcttctcagttgaaacaatcctactgtgctatttgtatggaagctaaacccgttgaagaaatgttccagaaccaaaaatgttcacattctt |
23694610 |
T |
|
| Q |
105 |
tctgtgaatattgtgttggaagatatctagctgcaaaaattaaagagagtatatcaatggtaaaatgtcctgatccaaaatgcaatgatattttggagcc |
204 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23694611 |
tctgtgaagattgtcttggaagatatctagctgcaaaaattcaagagagtatatcaatggtaaaatgtcctgatccaaaatgcaatgatattttggagcc |
23694710 |
T |
|
| Q |
205 |
tcatgattgtagttcaattttagcaaaggatgtgtttgatagatgggaaaatgcactttgtgagaatatggtgttaggttcacagaaattttattgtcct |
304 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23694711 |
tcatgattgtagttcaattttaccaaaggatgtgtttgatagatgggaaaatgcactttgtgagaatatggtgttaggttcacagaaattttattgtcct |
23694810 |
T |
|
| Q |
305 |
tttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtcatagattgttctgtgcacaatgtaagg |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23694811 |
tttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtcatagattgttctgtgcacaatgtaagg |
23694910 |
T |
|
| Q |
405 |
tttcatggcac |
415 |
Q |
| |
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||||||||||| |
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| T |
23694911 |
tttcatggcac |
23694921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 415
Target Start/End: Original strand, 23696647 - 23697052
Alignment:
| Q |
11 |
tcttcttctcagttgaaacaa-tcctattgtgatatctgcatggaagctaaacctgttgaagaaatgttccaaaaccgaaaatgttcacactctttctgt |
109 |
Q |
| |
|
||||||||||| |||||| || ||||| |||| ||||||||||||||||||||||| || |||||||||| |||||| ||| |||||||||||||||||| |
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| T |
23696647 |
tcttcttctcaattgaaaaaaatcctactgtgctatctgcatggaagctaaacctgctgcagaaatgttcgaaaaccaaaactgttcacactctttctgt |
23696746 |
T |
|
| Q |
110 |
gaatattgtgttggaagatatctagctgcaaaaattaaagagagtatatcaatggtaaaatgtcctgatccaaaatgcaatgatattttggagcctcatg |
209 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||||| ||||||| ||||||| ||| |||||||||||| |
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| T |
23696747 |
gaaggatgtgttggaagttatctagctgcaaaaattcaagagaatatagcaatggtaaaatgtccttatccaaattgcaatggtatattggagcctcata |
23696846 |
T |
|
| Q |
210 |
attgtagttcaattttagcaaaggatgtgtttgatagatgggaaaatgcactttgtgagaatatggtgttaggttcacagaaattttattgtccttttaa |
309 |
Q |
| |
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||||||| | || || |||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| |||||| ||||| || ||||||||||| |
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| T |
23696847 |
attgtagcacccttataccaaaggatgtgtttgagagatggggaaaggcactttgtgagaatatggtgttagattcacaaaaattgtactgtccttttaa |
23696946 |
T |
|
| Q |
310 |
tgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtcatagattgttctgtgcacaatgtaaggtttca |
409 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||| | |||| || | ||| || ||||| |||||| ||||||| || ||||||||||||||||||||| |
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| T |
23696947 |
tgattgttcagctatgttggtgaatgatgaagaggaagttgtaaccgtttctgagtgtcctcattgtaatagattattttgtgcacaatgtaaggtttca |
23697046 |
T |
|
| Q |
410 |
tggcac |
415 |
Q |
| |
|
|||||| |
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|
| T |
23697047 |
tggcac |
23697052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 58 - 415
Target Start/End: Complemental strand, 8149377 - 8149023
Alignment:
| Q |
58 |
taaacctgttgaagaaatgttccaaaaccgaaaatgttcacactctttctgtgaatattgtgttggaagatatctagctgcaaaaattaaagagagtata |
157 |
Q |
| |
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||||||| ||||| |||||||| ||| |||| ||||| ||||||||||||||| ||||||||| ||||| |||||||| |||||| |||||| | | |
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| T |
8149377 |
taaacctattgaaaaaatgttcaaaagtagaaactgttcgcactctttctgtgaagattgtgttgcaagatttctagctgtgaaaattcaagagaaaaaa |
8149278 |
T |
|
| Q |
158 |
tcaatggtaaaatgtcctgatccaaaatgcaatgatattttggagcctcatgattgtagttcaattttagcaaaggatgtgtttgatagatgggaaaatg |
257 |
Q |
| |
|
||| ||||||||||||||||||| |||||| || ||| || |||| | |||| ||||||| || ||||||||||||| || ||||||| | ||| |
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|
| T |
8149277 |
gcaacaataaaatgtcctgatccaaattgcaatagtaattttgacactcaacaatgtatttcaattataccaaaggatgtgttcgaaagatggggagatg |
8149178 |
T |
|
| Q |
258 |
cactttgtgagaatatggtgttaggttcacagaaattttattgtccttttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgc |
357 |
Q |
| |
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|||| ||| | | |||| || ||| ||||| |||||||||||||||| |||||||||||||||||| ||||||||| ||| | | |||||| |
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| T |
8149177 |
cactagttga---ttcgatgttcggatcaaagaaaatttattgtccttttaaggattgttcagctatgttggtgaatgatggaaatgaagttgtgagaat |
8149081 |
T |
|
| Q |
358 |
ttcggaatgtccacattgtcatagattgttctgtgcacaatgtaaggtttcatggcac |
415 |
Q |
| |
|
| ||||||||||||||||||||||| | ||||| ||||||||| | ||| |||||||| |
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|
| T |
8149080 |
tacggaatgtccacattgtcatagactattctgcgcacaatgtcaagttccatggcac |
8149023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 416
Target Start/End: Original strand, 24990999 - 24991043
Alignment:
| Q |
372 |
attgtcatagattgttctgtgcacaatgtaaggtttcatggcacg |
416 |
Q |
| |
|
|||||||||| || ||||||||||||||||| ||| ||||||||| |
|
|
| T |
24990999 |
attgtcataggttattctgtgcacaatgtaaagttccatggcacg |
24991043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 416
Target Start/End: Original strand, 25014536 - 25014580
Alignment:
| Q |
372 |
attgtcatagattgttctgtgcacaatgtaaggtttcatggcacg |
416 |
Q |
| |
|
|||||||||| || ||||||||||||||||| ||| ||||||||| |
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|
| T |
25014536 |
attgtcataggttattctgtgcacaatgtaaagttccatggcacg |
25014580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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