View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14976_low_8 (Length: 385)
Name: NF14976_low_8
Description: NF14976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14976_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 43289862 - 43289518
Alignment:
| Q |
1 |
aattctactaggaccagtattagtattggaatgagaacgaagaaaatgagaatgtatagcttttccagtaagaatatctttagttaaagcacaagcttta |
100 |
Q |
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| T |
43289862 |
aattctactaggaccagtattagtattcgaatgagaacgaagaaaatgagaatgtatagcttttccagtaagaatatctttagttaaagcacaagcttta |
43289763 |
T |
|
| Q |
101 |
agagtggaagagaatgtataaggatcaaaagtagaacaagaagaatttgatctcattttggcgtataaaagaagagcttgatgaggcaagttgttgcaga |
200 |
Q |
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| T |
43289762 |
agagtggaagagaatgtataaggatcaaaagtagaacaagaagaatttgatctcattttggcgtataaaagaagagcttgatgaggcaagttgttgcaga |
43289663 |
T |
|
| Q |
201 |
tgaagccgatgatgacggagttccagacgacggtggaaggacgaggaagagaatcgagaagatgaagagcgagatgaggttgaccttcgcggcagagttt |
300 |
Q |
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| T |
43289662 |
tgaagccgatgatgacggagttccagacgacggtggaaggacgaggaagagaatcgagaagatgaagagcgagatgaggttgaccttcgcggcagagttt |
43289563 |
T |
|
| Q |
301 |
gctgagacgtgaacgaatgcttgtgctgatagctttgttccattg |
345 |
Q |
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| T |
43289562 |
gctgagacgtgaacgaatgcttgtgctgatagctttgttccattg |
43289518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 52105378 - 52105042
Alignment:
| Q |
1 |
aattctactaggaccagtattagtattggaatgagaacgaagaaaatgagaatgtatagcttttccagtaagaatatctttagttaaagcacaagcttta |
100 |
Q |
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|||||||| |||||| |||| | |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
52105378 |
aattctaccaggacccatattggaattggaatgagaacgaagaaaatgagaatgtatagctttt----taacaatatctttagttaaagcacaagcttta |
52105283 |
T |
|
| Q |
101 |
agagtggaagagaatgtataaggatcaaaagtagaacaagaagaatttgatctcattttggcgtataaaagaagagcttgatgaggcaagttgttgcaga |
200 |
Q |
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|||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52105282 |
agagtggaagagaatgtataagaat-aaaagtagaacaagaa---tttgatctcattttggcgtataaaagaagagcttggtgaggcaagttgttgcaga |
52105187 |
T |
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| Q |
201 |
tgaagccgatgatgacggagttccagacgacggtggaaggacgaggaagagaatcgagaagatgaagagcgagatgaggttgaccttcgcggcagagttt |
300 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
52105186 |
tgaagccggtgatgacggagttccagacgacggtggaaggacgaggaagagaatcaacaagatgaagagcgagatgaggttgaccttcgcggcagagttt |
52105087 |
T |
|
| Q |
301 |
gctgagacgtgaacgaatgcttgtgctgatagctttgttccattg |
345 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
52105086 |
gctgagacgtgaacgaatgtttgtgctgattgctttgttccattg |
52105042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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