View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14977_high_1 (Length: 691)

Name: NF14977_high_1
Description: NF14977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14977_high_1
NF14977_high_1
[»] chr4 (2 HSPs)
chr4 (18-452)||(40613916-40614349)
chr4 (462-528)||(17558824-17558890)
[»] chr1 (3 HSPs)
chr1 (463-528)||(38236310-38236375)
chr1 (461-528)||(6923503-6923570)
chr1 (463-511)||(51387129-51387177)
[»] chr8 (1 HSPs)
chr8 (460-515)||(16367864-16367919)
[»] chr5 (3 HSPs)
chr5 (460-515)||(16349712-16349767)
chr5 (463-528)||(16222680-16222745)
chr5 (463-515)||(4082576-4082628)
[»] chr7 (1 HSPs)
chr7 (463-500)||(7853691-7853728)


Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 40613916 - 40614349
Alignment:
Q  18 caatttcttggagtttcgtttgttccacgttgttaagagtgtcaagcgttgacgttgcagcttctatttcttctatagaaggtctaggtggaagtgaaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40613916 caatttcttggagtttcgtttgttccacgttgttaagagtgtcaagcgttgacgttgcagcttctatttcttctatagaaggtctaggtggaagtgaaga 40614015  T
Q  118 atagatttgtgtgatttcttgtattgtgtctagaaaggcacgtgaaggtggttgtggataaggtgtggtggccatgaatattgatatgatggaagaagga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40614016 atagatttgtgtgatttcttgtattgtgtctagaaaggcacgtgaaggtggttgtggataaggtgtggtggccatgaatattgatatggtggaagaagga 40614115  T
Q  218 agaagagtttggagtggctatgtactaatagttgtagaaattaatggaacagggttgggagaaagaaacaaagtggagatgnnnnnnnggacagaaattt 317  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  40614116 agaagagtttggagtggctatgtacaaatagttgtagaaattaatggaacagggttgggagaaagaaacaaagtggaaatgaaaaaaaggacagaaattt 40614215  T
Q  318 tgttagtgttgtgaaaaacagagaaatggttgctatgtacaacctaaattttcttatgatttggtttggtccttgtcttctttactttgtttaagacaag 417  Q
    ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40614216 tgtgagtgttgtgaaaaacagagaaatggttgctatgtac-acctaaattttctgatgatttggtttggtccttgtcttctttactttgtttaagacaag 40614314  T
Q  418 actaagctaacctcgtacagttgagctttattata 452  Q
    |||||||||||||||||||||||||||||||||||    
T  40614315 actaagctaacctcgtacagttgagctttattata 40614349  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 462 - 528
Target Start/End: Original strand, 17558824 - 17558890
Alignment:
Q  462 aactagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaaacattaactgaaattcatt 528  Q
    |||||||||||||||||||||   |||||||||||||||| || ||||| || |  |||||||||||    
T  17558824 aactagatcgtctacccgtgctgccgcacgggtcatatatagccaaaaagataatatgaaattcatt 17558890  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 528
Target Start/End: Original strand, 38236310 - 38236375
Alignment:
Q  463 actagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaaacattaactgaaattcatt 528  Q
    |||||||||||||||||||||   ||||||||||||||| |||||||||||||  |||| ||||||    
T  38236310 actagatcgtctacccgtgcggcagcacgggtcatatatagctaaaaacattagttgaacttcatt 38236375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 461 - 528
Target Start/End: Complemental strand, 6923570 - 6923503
Alignment:
Q  461 aaactagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaaacattaactgaaattcatt 528  Q
    ||||||||||||||||||||||    ||||||||||||||| |||||||| ||||  |||| ||||||    
T  6923570 aaactagatcgtctacccgtgcagcagcacgggtcatatatagctaaaaatattagttgaacttcatt 6923503  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 463 - 511
Target Start/End: Original strand, 51387129 - 51387177
Alignment:
Q  463 actagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaaac 511  Q
    ||||||||||||||||||||   |||||||||||||||| | |||||||    
T  51387129 actagatcgtctacccgtgctgccgcacgggtcatatatagttaaaaac 51387177  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 460 - 515
Target Start/End: Complemental strand, 16367919 - 16367864
Alignment:
Q  460 gaaactagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaaacatta 515  Q
    |||||||||||||||||||||||   |||||||||||||||| | | |||||||||    
T  16367919 gaaactagatcgtctacccgtgctgccgcacgggtcatatatagtttaaaacatta 16367864  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 460 - 515
Target Start/End: Original strand, 16349712 - 16349767
Alignment:
Q  460 gaaactagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaaacatta 515  Q
    |||||||||||||| ||||||||   |||||||||||||||| | |||||||||||    
T  16349712 gaaactagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacatta 16349767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 528
Target Start/End: Complemental strand, 16222745 - 16222680
Alignment:
Q  463 actagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaaacattaactgaaattcatt 528  Q
    ||||||||||||||||||||   |||||  ||||||||| |||||||||||||  |||| ||||||    
T  16222745 actagatcgtctacccgtgctgccgcacatgtcatatatagctaaaaacattagttgaacttcatt 16222680  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 463 - 515
Target Start/End: Complemental strand, 4082628 - 4082576
Alignment:
Q  463 actagatcgtctacccgtgcgaacgcacgggtcatatatggctaaaaacatta 515  Q
    ||||||||||| ||||||||   |||||||||||||||| | |||||||||||    
T  4082628 actagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacatta 4082576  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 500
Target Start/End: Complemental strand, 7853728 - 7853691
Alignment:
Q  463 actagatcgtctacccgtgcgaacgcacgggtcatata 500  Q
    |||||||||||||||||||| | |||||||||||||||    
T  7853728 actagatcgtctacccgtgctaccgcacgggtcatata 7853691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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