View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14977_high_15 (Length: 293)
Name: NF14977_high_15
Description: NF14977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14977_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 275
Target Start/End: Original strand, 36771004 - 36771261
Alignment:
| Q |
15 |
catagggtttgctggaatcctaaaaagtgaaataattcaattgttgacaatgacgtttattatactaaatacatggtcattggtcagtgattagttaaaa |
114 |
Q |
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| T |
36771004 |
catagggtttgctggaatcctaaaaagtgaaataattcaattgttgacaatgatgtttattatactaaatacatggtcattggtcagtgattagttaata |
36771103 |
T |
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| Q |
115 |
agatcaagtgagcacaaaattttcctatggttgtgaatataataataatagagaatactgtattatagtatatgcttaataagcaagaatgatagctgag |
214 |
Q |
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| T |
36771104 |
agatcaagtgagcacaaaattttcctatggttgtgaat---ataataatagagaatactgtattatagtatatgcttaataagcaagaatgatagctgag |
36771200 |
T |
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| Q |
215 |
ttgttatccatttcattcttataatttattgttataaagtgaagaatttgaaaaacgaaat |
275 |
Q |
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| T |
36771201 |
ttgttatccatttcattcttataatttattgttataaagtgaagaacttgaaaaacgaaat |
36771261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 36783564 - 36783619
Alignment:
| Q |
38 |
aaagtgaaataattcaattgttgacaatgacgtttattatactaaatacatggtca |
93 |
Q |
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| T |
36783564 |
aaagttaaatgattcaattgttgacaatgatgtttattatgctaaatacatggtca |
36783619 |
T |
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