View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14977_high_18 (Length: 277)

Name: NF14977_high_18
Description: NF14977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14977_high_18
NF14977_high_18
[»] scaffold0009 (2 HSPs)
scaffold0009 (1-261)||(40437-40697)
scaffold0009 (31-258)||(33822-34049)
[»] chr5 (7 HSPs)
chr5 (34-112)||(19806889-19806967)
chr5 (32-96)||(17377359-17377423)
chr5 (34-158)||(25511072-25511196)
chr5 (34-109)||(1347935-1348010)
chr5 (60-111)||(20111942-20111993)
chr5 (32-96)||(17383724-17383788)
chr5 (34-98)||(19653900-19653964)
[»] chr6 (1 HSPs)
chr6 (35-99)||(16258450-16258514)
[»] chr2 (1 HSPs)
chr2 (54-99)||(15784653-15784698)
[»] chr3 (2 HSPs)
chr3 (35-99)||(32226556-32226620)
chr3 (35-99)||(32242030-32242094)


Alignment Details
Target: scaffold0009 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 40697 - 40437
Alignment:
Q  1 aatcaaattatagctgctatccatgggaatgataaacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacctcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40697 aatcaaattatagctgctatccatgggaatgataaacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacctcac 40598  T
Q  101 tccagtcatgagtgacacgtgaagtccacgataaccgaagttcaattaagttttcaaatataggtaagcttttgtaatatgaagtannnnnnncacttgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||| ||    
T  40597 tccagtcatgagtgacacgtgaagtccacgataaccgaagttcaattaagttttcaaatataggtaagcttttgtaatatgaagtattttcttcactagg 40498  T
Q  201 aagacgagtccccatctgcacatcacaaacaaacaaaaatcaaacaacatacgtaatattg 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40497 aagacgagtccccatctgcacatcacaaacaaacaaaaatcaaacaacatacgtaatattg 40437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 31 - 258
Target Start/End: Complemental strand, 34049 - 33822
Alignment:
Q  31 gataaacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacctcactccagtcatgagtgacacgtgaagtccacg 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  34049 gataaacaaacctttttaatcgaaagagtttgaagtttcggacaatgctggagcatttgcattacctcactccagtcatgagtaacacgtgaagtccacg 33950  T
Q  131 ataaccgaagttcaattaagttttcaaatataggtaagcttttgtaatatgaagtannnnnnncacttggaagacgagtccccatctgcacatcacaaac 230  Q
    |||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||        || | ||||||||||||||||||||||||||||||||    
T  33949 ataaccgaagttcaattaagttttcaaatagaggcaagtttttgtaatatgaagtgttttcttcattgggaagacgagtccccatctgcacatcacaaac 33850  T
Q  231 aaacaaaaatcaaacaacatacgtaata 258  Q
    ||||||||||||||||||||||||||||    
T  33849 aaacaaaaatcaaacaacatacgtaata 33822  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 19806967 - 19806889
Alignment:
Q  34 aaacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacctcactccagtcatgag 112  Q
    ||||||||||||||||| | ||||||||| ||||| |||||||| ||||||||||||| |||||||  ||| |||||||    
T  19806967 aaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctcatcccaatcatgag 19806889  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 17377423 - 17377359
Alignment:
Q  32 ataaacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacc 96  Q
    ||||||||||||||  ||| | ||||||||||||||| ||||||||||| |||||||||| ||||    
T  17377423 ataaacaaacctttacaatggtaagagtttgaagtttgggacaattctgtagcattttcaatacc 17377359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 158
Target Start/End: Original strand, 25511072 - 25511196
Alignment:
Q  34 aaacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacctcactccagtcatgagtgacacgtgaagtccacgata 133  Q
    ||||||||||||| |||  |||||| || |||||| |||| |||   ||||||||||| || |||||||||||||| |||| | ||   |  ||| ||||    
T  25511072 aaacaaaccttttcaatgtaaagagcttcaagtttgggactattgatgagcattttcagtatctcactccagtcataagtgtctcgattaaaccaagata 25511171  T
Q  134 accgaagttcaattaagttttcaaa 158  Q
     ||||||||||||||||||||||||    
T  25511172 tccgaagttcaattaagttttcaaa 25511196  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 1347935 - 1348010
Alignment:
Q  34 aaacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacctcactccagtcat 109  Q
    ||||||||||||  ||| || |||||||||||||| |||||||||| ||||||||||| || ||||| ||| ||||    
T  1347935 aaacaaacctttgaaatggagagagtttgaagtttaggacaattctcgagcattttcactatctcaccccaatcat 1348010  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 20111993 - 20111942
Alignment:
Q  60 ttgaagtttcggacaattctggagcattttcattacctcactccagtcatga 111  Q
    ||||||||| ||||| |||||||||||||||| |||||||| ||||||||||    
T  20111993 ttgaagtttgggacatttctggagcattttcactacctcaccccagtcatga 20111942  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 17383788 - 17383724
Alignment:
Q  32 ataaacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacc 96  Q
    ||||||||||||||  ||| | ||||||||||||| | ||||||||||| |||||||||| ||||    
T  17383788 ataaacaaacctttagaatggtaagagtttgaagtatgggacaattctgtagcattttcactacc 17383724  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 19653900 - 19653964
Alignment:
Q  34 aaacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacctc 98  Q
    |||||||||||||||||   ||||| ||||||||| |||||||  || ||||||||||| |||||    
T  19653900 aaacaaacctttttaattttaagagcttgaagtttgggacaatattgtagcattttcataacctc 19653964  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 16258450 - 16258514
Alignment:
Q  35 aacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacctca 99  Q
    |||||||||||  ||| |||||| ||||||||||||||||||| |||||||||| || |||||||    
T  16258450 aacaaacctttgaaattgaaagactttgaagtttcggacaattatggagcatttgcactacctca 16258514  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 15784698 - 15784653
Alignment:
Q  54 aagagtttgaagtttcggacaattctggagcattttcattacctca 99  Q
    ||||| ||||||||| ||||||||||| |||||||||| |||||||    
T  15784698 aagagcttgaagttttggacaattctgtagcattttcactacctca 15784653  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 32226620 - 32226556
Alignment:
Q  35 aacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacctca 99  Q
    |||||||||||  ||| | ||||||||||||||| |||||||  |||||||||| || |||||||    
T  32226620 aacaaacctttgaaattggaagagtttgaagtttgggacaataatggagcatttgcactacctca 32226556  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 32242030 - 32242094
Alignment:
Q  35 aacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacctca 99  Q
    |||||||||||  ||| |||||||||||||| || |||||||  |||||||||| || |||||||    
T  32242030 aacaaacctttaaaattgaaagagtttgaaggttgggacaataatggagcatttgcagtacctca 32242094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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